UHGV-0163818

Genome information

Genome length 34,427 bps

CDS count 55

Completeness 81.23% (medium-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163818
vOTU ID	vOTU-018134
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_554110
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.01
Jumbo phage	No

Genome content
Genome length	34,427 bps
GC content	47.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.48%
Average CDS length	584.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163818_1	PHROG	phrog_4575	NA	unknown function
UHGV-0163818_1	eggNOG-mapper	385682.AFSL01000061_gene1749	NA	NA
UHGV-0163818_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0163818_3	PHROG	phrog_15001	endolysin	lysis
UHGV-0163818_3	UniRef90	UniRef90_A0A8D9UHF0	PGRP protein	NA
UHGV-0163818_3	eggNOG-mapper	411483.FAEPRAA2165_03397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163818_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0163818_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163818_3	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0163818_4	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-0163818_5	PHROG	phrog_37604	NA	unknown function
UHGV-0163818_5	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0163818_6	PHROG	phrog_2310	NA	unknown function
UHGV-0163818_6	eggNOG-mapper	1415774.U728_3409	NA	NA
UHGV-0163818_8	UniRef90	UniRef90_A0A8D9PDI7	mRNA splicing protein	NA
UHGV-0163818_8	Pfam	PF13418	Galactose oxidase, central domain	Kelch_4
UHGV-0163818_8	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0163818_9	KOfam	K20285	RABEPK; Rab9 effector protein with kelch motifs	NA
UHGV-0163818_9	UniRef90	UniRef90_A0A8D9PDI7	mRNA splicing protein	NA
UHGV-0163818_9	Pfam	PF01344	Kelch motif	Kelch_1
UHGV-0163818_9	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0163818_9	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0163818_11	PHROG	phrog_18725	NA	unknown function
UHGV-0163818_11	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0163818_12	PHROG	phrog_13879	NA	unknown function
UHGV-0163818_12	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0163818_12	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0163818_13	PHROG	phrog_1194	NA	unknown function
UHGV-0163818_13	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0163818_13	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0163818_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0163818_14	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0163818_14	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0163818_14	COG	COG1511	NA	NA
UHGV-0163818_14	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0163818_15	PHROG	phrog_706	NA	unknown function
UHGV-0163818_15	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0163818_15	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0163818_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0163818_15	Structural annotation	PF06854	NA	NA
UHGV-0163818_16	PHROG	phrog_11299	NA	unknown function
UHGV-0163818_16	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0163818_16	Structural annotation	PF10666	NA	NA
UHGV-0163818_17	PHROG	phrog_3099	NA	unknown function
UHGV-0163818_17	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0163818_17	Structural annotation	TIGR02126	NA	NA
UHGV-0163818_18	PHROG	phrog_3266	tail completion	connector
UHGV-0163818_18	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0163818_18	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0163818_18	Structural annotation	PF12691	NA	NA
UHGV-0163818_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0163818_19	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0163818_19	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0163818_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0163818_19	Structural annotation	PF11114	NA	NA
UHGV-0163818_20	PHROG	phrog_3366	NA	unknown function
UHGV-0163818_20	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0163818_20	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0163818_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0163818_21	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0163818_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-0163818_22	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0163818_22	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0163818_22	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0163818_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0163818_23	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0163818_23	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0163818_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0163818_23	Structural annotation	PF06810	NA	NA
UHGV-0163818_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0163818_25	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0163818_25	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0163818_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0163818_25	COG	COG2369	NA	NA
UHGV-0163818_25	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0163818_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0163818_26	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0163818_26	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0163818_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0163818_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0163818_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0163818_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0163818_27	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0163818_27	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0163818_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0163818_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0163818_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0163818_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0163818_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0163818_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0163818_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0163818_28	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0163818_28	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0163818_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0163818_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0163818_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0163818_29	PHROG	phrog_33130	NA	unknown function
UHGV-0163818_29	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0163818_29	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0163818_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0163818_30	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0163818_30	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-0163818_30	Pfam	PF07374	NA	DUF1492
UHGV-0163818_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0163818_30	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0163818_34	PHROG	phrog_22543	NA	unknown function
UHGV-0163818_35	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0163818_35	UniRef90	UniRef90_UPI00195B0EE7	methyltransferase domain-containing protein	NA
UHGV-0163818_35	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0163818_35	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0163818_35	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0163818_35	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0163818_35	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0163818_36	eggNOG-mapper	33035.JPJF01000014_gene4825	YodL-like	NA
UHGV-0163818_36	Pfam	PF14191	YodL-like	YodL
UHGV-0163818_37	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163818_37	UniRef90	UniRef90_A0A1C6D177	Myb-like DNA-binding domain	NA
UHGV-0163818_37	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0163818_37	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0163818_37	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0163818_37	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0163818_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0163818_38	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0163818_38	UniRef90	UniRef90_UPI00068AC68F	ParB/RepB/Spo0J family partition protein	NA
UHGV-0163818_38	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-0163818_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0163818_38	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0163818_38	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0163818_38	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0163818_39	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0163818_39	UniRef90	UniRef90_UPI001156D044	NA	NA
UHGV-0163818_39	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0163818_39	Pfam	PF06356	NA	DUF1064
UHGV-0163818_39	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0163818_40	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163818_40	eggNOG-mapper	1217713.F993_01546	NA	NA
UHGV-0163818_40	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0163818_41	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0163818_41	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0163818_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0163818_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0163818_42	UniRef90	UniRef90_A0A3D0Z823	Recombinase RecT	NA
UHGV-0163818_42	eggNOG-mapper	330399.A8ATY6_9CAUD	DNA metabolic process	NA
UHGV-0163818_42	Pfam	PF03837	RecT family	RecT
UHGV-0163818_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0163818_42	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0163818_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163818_43	UniRef90	UniRef90_A0A7I8D1X6	YqaJ domain-containing protein	NA
UHGV-0163818_43	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0163818_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0163818_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0163818_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0163818_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0163818_44	Structural annotation	PF13639	NA	NA
UHGV-0163818_48	UniRef90	UniRef90_UPI00148AE9D1	helix-turn-helix transcriptional regulator	NA
UHGV-0163818_48	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0163818_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0163818_48	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0163818_53	UniRef90	UniRef90_A0A7X5E0G0	XRE family transcriptional regulator	NA
UHGV-0163818_53	eggNOG-mapper	445971.ANASTE_01584	Helix-turn-helix	NA
UHGV-0163818_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163818_53	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0163818_54	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0163818_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0163818_54	UniRef90	UniRef90_R6BD38	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0163818_54	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0163818_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163818_54	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0163818_54	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0163818_54	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0163818_55	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0163818_55	UniRef90	UniRef90_UPI0015D91E8D	Abi family protein	NA
UHGV-0163818_55	eggNOG-mapper	1045858.Bint_2390	Abi-like protein	NA
UHGV-0163818_55	PADLOC	AbiD	AbiD	Abi
UHGV-0163818_55	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0163818_55	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0163818_55	Structural annotation	PF07751, COG4823	NA	NA