UHGV-0163861

Genome information

Genome length 28,893 bps

CDS count 41

Completeness 100.00% (complete)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163861
vOTU ID	vOTU-046340
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539443
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.72
Jumbo phage	No

Genome content
Genome length	28,893 bps
GC content	62.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.54%
Average CDS length	669.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163861_1	PHROG	phrog_1129	holin	lysis
UHGV-0163861_1	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0163861_1	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0163861_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0163861_1	Structural annotation	PF06946	NA	NA
UHGV-0163861_2	PHROG	phrog_1863	NA	unknown function
UHGV-0163861_2	UniRef90	UniRef90_UPI001E345E1F	hemolysin XhlA family protein	NA
UHGV-0163861_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0163861_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0163861_3	PHROG	phrog_5182	endolysin	lysis
UHGV-0163861_3	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0163861_3	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0163861_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0163861_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0163861_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0163861_4	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0163861_4	PHROG	phrog_7158	NA	unknown function
UHGV-0163861_4	UniRef90	UniRef90_A0A810PV47	Metallophos domain-containing protein	NA
UHGV-0163861_4	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0163861_4	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0163861_4	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-0163861_6	PHROG	phrog_3558	tail protein	tail
UHGV-0163861_6	UniRef90	UniRef90_A0A099I451	Phage minor structural protein	NA
UHGV-0163861_6	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-0163861_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0163861_6	COG	COG4926	Phage-related protein	NA
UHGV-0163861_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0163861_8	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0163861_8	UniRef90	UniRef90_A0A837KZW3	PblA	NA
UHGV-0163861_8	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0163861_8	COG	COG1511	NA	NA
UHGV-0163861_9	PHROG	phrog_1633	NA	unknown function
UHGV-0163861_9	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-0163861_9	eggNOG-mapper	1121864.OMO_02160	NA	NA
UHGV-0163861_9	Structural annotation	PF17318	NA	NA
UHGV-0163861_10	PHROG	phrog_1526	NA	unknown function
UHGV-0163861_10	eggNOG-mapper	1321820.HMPREF1983_00926	NA	NA
UHGV-0163861_11	PHROG	phrog_117	major tail protein	tail
UHGV-0163861_11	UniRef90	UniRef90_A0A1Q9YGH5	Phage tail protein	NA
UHGV-0163861_11	eggNOG-mapper	706433.HMPREF9430_01260	domain, Protein	NA
UHGV-0163861_11	COG	COG5492	NA	NA
UHGV-0163861_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0163861_12	PHROG	phrog_123	tail terminator	connector
UHGV-0163861_12	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0163861_12	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0163861_12	Structural annotation	PF06141	NA	NA
UHGV-0163861_13	PHROG	phrog_387	neck protein	connector
UHGV-0163861_14	PHROG	phrog_501	head closure Hc1	connector
UHGV-0163861_14	eggNOG-mapper	665950.HMPREF1025_02528	NA	NA
UHGV-0163861_14	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0163861_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0163861_16	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0163861_16	Pfam	PF09355	NA	Phage_Gp19
UHGV-0163861_16	Structural annotation	PF09355	NA	NA
UHGV-0163861_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-0163861_18	UniRef90	UniRef90_A0A4D6ABB9	Major capsid protein	NA
UHGV-0163861_18	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0163861_18	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0163861_19	PHROG	phrog_3760	head scaffolding protein	head and packaging
UHGV-0163861_19	UniRef90	UniRef90_A0A396KYN2	NA	NA
UHGV-0163861_19	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0163861_19	Pfam	PF14265	NA	DUF4355
UHGV-0163861_19	Structural annotation	PF14265	NA	NA
UHGV-0163861_20	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0163861_20	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0163861_20	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0163861_20	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0163861_21	PHROG	phrog_104	portal protein	head and packaging
UHGV-0163861_21	UniRef90	UniRef90_UPI0009847372	phage portal protein	NA
UHGV-0163861_21	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0163861_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0163861_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0163861_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0163861_22	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0163861_22	eggNOG-mapper	1410630.JNKP01000001_gene1822	phage terminase, large subunit	NA
UHGV-0163861_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0163861_22	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0163861_23	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0163861_23	UniRef90	UniRef90_UPI001BEA8267	P27 family phage terminase small subunit	NA
UHGV-0163861_23	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-0163861_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0163861_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0163861_24	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163861_24	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0163861_24	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0163861_24	Structural annotation	PF01844	NA	NA
UHGV-0163861_25	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0163861_25	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0163861_25	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0163861_25	Structural annotation	PF14205	NA	NA
UHGV-0163861_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163861_26	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0163861_26	Structural annotation	PF21578	NA	NA
UHGV-0163861_27	PHROG	phrog_3136	NA	unknown function
UHGV-0163861_27	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0163861_27	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0163861_27	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0163861_27	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0163861_29	PHROG	phrog_5781	NA	unknown function
UHGV-0163861_29	UniRef90	UniRef90_R5AT00	Gp57	NA
UHGV-0163861_29	eggNOG-mapper	1397284.AYMN01000083_gene2419	NA	NA
UHGV-0163861_29	Pfam	PF14359	NA	DUF4406
UHGV-0163861_29	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0163861_29	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0163861_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0163861_30	PHROG	phrog_27290	NA	unknown function
UHGV-0163861_30	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-0163861_30	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0163861_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0163861_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0163861_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0163861_31	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0163861_31	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0163861_31	UniRef90	UniRef90_A0A3D1VAU9	ParA family protein	NA
UHGV-0163861_31	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0163861_31	Pfam	PF13614	AAA domain	AAA_31
UHGV-0163861_31	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0163861_31	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0163861_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0163861_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0163861_33	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0163861_33	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0163861_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0163861_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0163861_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0163861_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0163861_34	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0163861_34	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0163861_34	eggNOG-mapper	693746.OBV_30130	NA	NA
UHGV-0163861_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0163861_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0163861_34	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0163861_35	UniRef90	UniRef90_A0A3D1V9Y1	HTH_17 domain-containing protein	NA
UHGV-0163861_35	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0163861_35	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0163861_35	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0163861_35	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0163861_36	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0163861_36	UniRef90	UniRef90_A0A3D1VA62	Transcriptional regulator	NA
UHGV-0163861_36	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0163861_36	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0163861_36	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0163861_36	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0163861_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0163861_37	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-0163861_37	UniRef90	UniRef90_A0A3D1VD81	XRE family transcriptional regulator	NA
UHGV-0163861_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163861_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0163861_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0163861_38	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0163861_38	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0163861_38	UniRef90	UniRef90_A0A3D1VDF3	LexA family transcriptional regulator	NA
UHGV-0163861_38	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0163861_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0163861_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0163861_38	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0163861_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0163861_38	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0163861_39	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0163861_39	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0163861_39	UniRef90	UniRef90_A0A3D1VB11	Exonuclease domain-containing protein	NA
UHGV-0163861_39	eggNOG-mapper	1408303.JNJJ01000108_gene69	3' exoribonuclease, RNase T-like	NA
UHGV-0163861_39	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0163861_39	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0163861_39	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0163861_39	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0163861_39	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0163861_40	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-0163861_40	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0163861_41	KOfam	K14059	int; integrase	NA
UHGV-0163861_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0163861_41	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0163861_41	eggNOG-mapper	1297617.JPJD01000022_gene1664	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0163861_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0163861_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0163861_41	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA