UHGV-0163974

Genome information

Genome length 33,448 bps

CDS count 49

Completeness 52.04% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0163974
vOTU ID	vOTU-027412
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_540583
BioSample	SAMN06328478
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.31
Jumbo phage	No

Genome content
Genome length	33,448 bps
GC content	38.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.43%
Average CDS length	648.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0163974_2	PHROG	phrog_5816	NA	unknown function
UHGV-0163974_2	UniRef90	UniRef90_A0A2H4J4X6	NA	NA
UHGV-0163974_2	eggNOG-mapper	1280663.ATVR01000003_gene187	NA	NA
UHGV-0163974_2	Pfam	PF14213	NA	DUF4325
UHGV-0163974_2	Structural annotation	PF14213	NA	NA
UHGV-0163974_3	PHROG	phrog_3364	NA	unknown function
UHGV-0163974_3	UniRef90	UniRef90_A0A5C8CIR6	ATP-binding protein	NA
UHGV-0163974_3	eggNOG-mapper	177439.DP1832	NA	NA
UHGV-0163974_3	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172	NA	NA
UHGV-0163974_4	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0163974_4	PHROG	phrog_670	endolysin	lysis
UHGV-0163974_4	UniRef90	UniRef90_A0A1C5PKT5	N-acetylmuramoyl-L-alanine amidase XlyA	NA
UHGV-0163974_4	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-0163974_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0163974_4	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0163974_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0163974_5	PHROG	phrog_199	holin	lysis
UHGV-0163974_5	UniRef90	UniRef90_A0A373Q192	Holin	NA
UHGV-0163974_5	eggNOG-mapper	411902.CLOBOL_03863	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0163974_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0163974_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0163974_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0163974_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0163974_6	PHROG	phrog_2310	NA	unknown function
UHGV-0163974_6	eggNOG-mapper	931626.Awo_c34950	NA	NA
UHGV-0163974_8	PHROG	phrog_2126	tail fiber protein	tail
UHGV-0163974_8	UniRef90	UniRef90_A0A1C6CU08	Pectate_lyase_3 domain-containing protein	NA
UHGV-0163974_8	eggNOG-mapper	1234679.BN424_1832	NA	NA
UHGV-0163974_8	Structural annotation	PF12708	NA	NA
UHGV-0163974_9	PHROG	phrog_521	tail protein	tail
UHGV-0163974_9	UniRef90	UniRef90_A0A373Q1W7	NA	NA
UHGV-0163974_9	eggNOG-mapper	632292.Calhy_0784	NA	NA
UHGV-0163974_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0163974_9	COG	COG3778	NA	NA
UHGV-0163974_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0163974_10	UniRef90	UniRef90_R6MD36	Baseplate J family protein	NA
UHGV-0163974_10	eggNOG-mapper	318464.IO99_13680	Baseplate J-like protein	NA
UHGV-0163974_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0163974_10	COG	COG3299	NA	NA
UHGV-0163974_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0163974_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0163974_11	UniRef90	UniRef90_A0A416D4N7	NA	NA
UHGV-0163974_11	eggNOG-mapper	1123239.KB898628_gene3247	NA	NA
UHGV-0163974_11	Pfam	PF10934	NA	DUF2634
UHGV-0163974_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0163974_11	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0163974_12	PHROG	phrog_579	NA	unknown function
UHGV-0163974_12	UniRef90	UniRef90_UPI0015A9C023	NA	NA
UHGV-0163974_12	Pfam	PF10844	NA	DUF2577
UHGV-0163974_12	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0163974_13	PHROG	phrog_400	tail protein	tail
UHGV-0163974_13	UniRef90	UniRef90_A0A1C5PJS5	Amidase_5 domain-containing protein	NA
UHGV-0163974_13	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0163974_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0163974_13	Structural annotation	PF14594, NF033848, NF033742, COG4379	NA	NA
UHGV-0163974_14	PHROG	phrog_23201	NA	unknown function
UHGV-0163974_14	UniRef90	UniRef90_R6M2K3	SLH domain-containing protein	NA
UHGV-0163974_14	eggNOG-mapper	1449126.JQKL01000051_gene3159	LysM domain	NA
UHGV-0163974_14	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0163974_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0163974_15	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0163974_15	UniRef90	UniRef90_A0A1C5PJB5	Phage-related protein	NA
UHGV-0163974_15	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0163974_15	COG	COG5412	Phage-related protein	NA
UHGV-0163974_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0163974_16	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0163974_16	UniRef90	UniRef90_A0A1V5X8M4	Phage XkdN-like protein	NA
UHGV-0163974_16	eggNOG-mapper	1449126.JQKL01000051_gene3162	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0163974_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0163974_16	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0163974_17	PHROG	phrog_365	tail protein	tail
UHGV-0163974_17	UniRef90	UniRef90_A0A1C6CTJ5	Phage-like element PBSX protein xkdM	NA
UHGV-0163974_17	eggNOG-mapper	552398.HMPREF0866_03108	Phage tail tube protein	NA
UHGV-0163974_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0163974_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0163974_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0163974_18	UniRef90	UniRef90_R6M5X5	Phage-like element pbsx protein XkdK	NA
UHGV-0163974_18	eggNOG-mapper	1449126.JQKL01000051_gene3164	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0163974_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0163974_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0163974_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0163974_19	PHROG	phrog_525	NA	unknown function
UHGV-0163974_19	UniRef90	UniRef90_R6MYT1	Conserved protein	NA
UHGV-0163974_19	eggNOG-mapper	332101.JIBU02000023_gene4809	NA	NA
UHGV-0163974_19	Pfam	PF20765	NA	DUF6838
UHGV-0163974_19	Structural annotation	PF20765, COG3167	NA	NA
UHGV-0163974_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0163974_20	UniRef90	UniRef90_A0A840PID0	Phage gpG-like protein	NA
UHGV-0163974_20	eggNOG-mapper	642492.Clole_2753	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0163974_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0163974_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0163974_21	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0163974_21	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-0163974_21	eggNOG-mapper	1029718.SFBM_0124	NA	NA
UHGV-0163974_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0163974_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0163974_22	UniRef90	UniRef90_R6N7E7	NA	NA
UHGV-0163974_22	eggNOG-mapper	445335.CBN_1380	Phage gp6-like head-tail connector protein	NA
UHGV-0163974_23	PHROG	phrog_247	major head protein	head and packaging
UHGV-0163974_23	UniRef90	UniRef90_R6MD14	Phage coat protein	NA
UHGV-0163974_23	eggNOG-mapper	1567014.A0A0A7RVZ1_9VIRU	NA	NA
UHGV-0163974_23	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0163974_23	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0163974_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0163974_24	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0163974_24	eggNOG-mapper	1567014.A0A0A7S0J5_9VIRU	Phage minor structural protein GP20	NA
UHGV-0163974_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0163974_24	Structural annotation	PF06810	NA	NA
UHGV-0163974_25	PHROG	phrog_3675	NA	unknown function
UHGV-0163974_25	UniRef90	UniRef90_R6M2H2	YjcQ protein	NA
UHGV-0163974_25	eggNOG-mapper	936573.HMPREF1147_1325	YjcQ protein	NA
UHGV-0163974_25	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0163974_25	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0163974_27	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0163974_27	UniRef90	UniRef90_A0A1C6CT58	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0163974_27	eggNOG-mapper	743719.PaelaDRAFT_2397	Phage Mu protein F like protein	NA
UHGV-0163974_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0163974_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0163974_27	COG	COG2369	NA	NA
UHGV-0163974_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0163974_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0163974_28	UniRef90	UniRef90_R6MCZ6	Phage portal protein SPP1 family	NA
UHGV-0163974_28	eggNOG-mapper	1567014.A0A0A7S0I9_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0163974_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0163974_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0163974_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0163974_29	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0163974_29	UniRef90	UniRef90_A0A373Q1B0	Terminase	NA
UHGV-0163974_29	eggNOG-mapper	1280692.AUJL01000025_gene2084	TIGRFAM Phage	NA
UHGV-0163974_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0163974_29	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0163974_29	COG	COG5410	NA	NA
UHGV-0163974_29	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0163974_30	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0163974_30	UniRef90	UniRef90_A0A1S5S8W6	Putative HNH endonuclease	NA
UHGV-0163974_30	eggNOG-mapper	1196323.ALKF01000117_gene4957	transposase activity	NA
UHGV-0163974_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0163974_30	Structural annotation	PF07141	NA	NA
UHGV-0163974_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0163974_32	UniRef90	UniRef90_UPI000368796A	NA	NA
UHGV-0163974_32	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0163974_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0163974_32	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0163974_35	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0163974_35	UniRef90	UniRef90_R6MU33	VRR-NUC domain-containing protein	NA
UHGV-0163974_35	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-0163974_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0163974_35	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0163974_35	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0163974_36	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0163974_36	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0163974_36	UniRef90	UniRef90_A0A416CVQ0	ATP-dependent helicase	NA
UHGV-0163974_36	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0163974_36	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0163974_36	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0163974_36	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0163974_36	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0163974_36	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0163974_37	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0163974_37	UniRef90	UniRef90_A0A1C6FXN2	Superfamily II helicase and inactivated derivatives	NA
UHGV-0163974_37	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0163974_37	Pfam	PF06048	NA	DUF927
UHGV-0163974_37	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0163974_37	COG	COG5519	NA	NA
UHGV-0163974_37	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0163974_38	PHROG	phrog_18107	NA	unknown function
UHGV-0163974_38	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0163974_38	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0163974_38	Pfam	PF05037	NA	DUF669
UHGV-0163974_38	Structural annotation	PF05037	NA	NA
UHGV-0163974_39	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0163974_39	UniRef90	UniRef90_UPI000C080C89	ATP-binding protein	NA
UHGV-0163974_39	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0163974_39	Pfam	PF13479	AAA domain	AAA_24
UHGV-0163974_39	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0163974_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0163974_40	UniRef90	UniRef90_R6MCS5	Siphovirus family protein	NA
UHGV-0163974_40	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0163974_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0163974_40	Structural annotation	PF05565	NA	NA
UHGV-0163974_41	PHROG	phrog_17740	NA	unknown function
UHGV-0163974_41	eggNOG-mapper	742738.HMPREF9460_00730	NA	NA
UHGV-0163974_42	Structural annotation	PF17574	NA	NA
UHGV-0163974_43	Structural annotation	PF10922	NA	NA
UHGV-0163974_47	PHROG	phrog_1090	NA	unknown function
UHGV-0163974_47	UniRef90	UniRef90_UPI000C06B978	CRISPR-associated protein Cas2	NA
UHGV-0163974_47	eggNOG-mapper	324057.Pjdr2_1651	NA	NA
UHGV-0163974_47	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA