UHGV-0164025

Genome information

Genome length 25,690 bps

CDS count 37

Completeness 60.41% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164025
vOTU ID	vOTU-028150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_555485
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.28
Jumbo phage	No

Genome content
Genome length	25,690 bps
GC content	34.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.02%
Average CDS length	651.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164025_3	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0164025_3	UniRef90	UniRef90_UPI0018C6F949	phage tail protein	NA
UHGV-0164025_3	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0164025_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0164025_3	Structural annotation	PF12571	NA	NA
UHGV-0164025_4	PHROG	phrog_521	tail protein	tail
UHGV-0164025_4	UniRef90	UniRef90_UPI0018739AB4	NA	NA
UHGV-0164025_4	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0164025_4	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0164025_4	COG	COG3778	NA	NA
UHGV-0164025_4	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0164025_5	PHROG	phrog_6	baseplate protein	tail
UHGV-0164025_5	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0164025_5	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0164025_5	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0164025_5	COG	COG3299	NA	NA
UHGV-0164025_5	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0164025_6	PHROG	phrog_120	baseplate protein	tail
UHGV-0164025_6	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0164025_6	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-0164025_6	Pfam	PF10934	NA	DUF2634
UHGV-0164025_6	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0164025_7	PHROG	phrog_579	NA	unknown function
UHGV-0164025_7	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0164025_7	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0164025_7	Pfam	PF10844	NA	DUF2577
UHGV-0164025_7	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0164025_8	PHROG	phrog_400	tail protein	tail
UHGV-0164025_8	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0164025_8	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0164025_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0164025_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0164025_9	PHROG	phrog_380	endolysin	lysis
UHGV-0164025_9	UniRef90	UniRef90_UPI001CF423A1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0164025_9	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0164025_9	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0164025_9	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0164025_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0164025_10	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0164025_10	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0164025_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0164025_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0164025_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0164025_10	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0164025_11	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0164025_11	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0164025_11	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0164025_11	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0164025_11	Structural annotation	PF08890	NA	NA
UHGV-0164025_12	PHROG	phrog_365	tail protein	tail
UHGV-0164025_12	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0164025_12	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0164025_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0164025_12	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0164025_13	PHROG	phrog_1480	tail sheath	tail
UHGV-0164025_13	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-0164025_13	eggNOG-mapper	1123250.KB908414_gene2110	Phage tail sheath C-terminal domain	NA
UHGV-0164025_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0164025_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0164025_13	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0164025_14	PHROG	phrog_525	NA	unknown function
UHGV-0164025_14	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0164025_14	Pfam	PF20765	NA	DUF6838
UHGV-0164025_14	Structural annotation	PF20765	NA	NA
UHGV-0164025_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164025_15	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0164025_15	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0164025_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0164025_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0164025_16	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0164025_16	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0164025_16	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0164025_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0164025_17	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0164025_19	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0164025_19	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0164025_19	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0164025_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0164025_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0164025_19	COG	COG2369	NA	NA
UHGV-0164025_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0164025_20	PHROG	phrog_247	major head protein	head and packaging
UHGV-0164025_20	UniRef90	UniRef90_D9R921	Phage coat protein	NA
UHGV-0164025_20	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0164025_20	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0164025_20	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0164025_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0164025_21	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0164025_21	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0164025_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0164025_21	Structural annotation	PF06810	NA	NA
UHGV-0164025_22	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0164025_22	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0164025_22	UniRef90	UniRef90_UPI001430CFAD	collagen-like protein	NA
UHGV-0164025_22	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0164025_22	COG	COG5295	Autotransporter adhesin	NA
UHGV-0164025_23	PHROG	phrog_29127	NA	unknown function
UHGV-0164025_23	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0164025_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164025_24	UniRef90	UniRef90_UPI001CD66E01	phage portal protein	NA
UHGV-0164025_24	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164025_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164025_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0164025_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164025_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0164025_25	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0164025_25	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0164025_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164025_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0164025_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164025_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164025_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164025_26	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0164025_26	UniRef90	UniRef90_UPI00195AD3A9	phage terminase small subunit	NA
UHGV-0164025_26	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0164025_26	COG	COG5484	NA	NA
UHGV-0164025_26	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0164025_27	eggNOG-mapper	411469.EUBHAL_02905	NA	NA
UHGV-0164025_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164025_28	UniRef90	UniRef90_UPI00195D58A8	NA	NA
UHGV-0164025_28	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0164025_31	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0164025_31	UniRef90	UniRef90_UPI0015A16367	SAM-dependent methyltransferase	NA
UHGV-0164025_31	eggNOG-mapper	796940.HMPREF9628_00165	methyltransferase	NA
UHGV-0164025_31	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0164025_31	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0164025_31	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0164025_31	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0164025_33	PHROG	phrog_8684	NA	unknown function
UHGV-0164025_33	UniRef90	UniRef90_H3K6U3	YopX domain-containing protein	NA
UHGV-0164025_33	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0164025_33	Pfam	PF09643	YopX protein	YopX
UHGV-0164025_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164025_34	UniRef90	UniRef90_A0A412CG73	NA	NA
UHGV-0164025_34	eggNOG-mapper	936573.HMPREF1147_1709	NA	NA
UHGV-0164025_34	Pfam	PF06356	NA	DUF1064