UHGV-0164077

Genome information

Genome length 40,481 bps

CDS count 64

Completeness 94.06% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164077
vOTU ID	vOTU-059575
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_552512
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.4
Jumbo phage	No

Genome content
Genome length	40,481 bps
GC content	48.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	88.18%
Average CDS length	560.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164077_1	PHROG	phrog_7964	NA	unknown function
UHGV-0164077_1	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0164077_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0164077_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0164077_3	PHROG	phrog_874	NA	unknown function
UHGV-0164077_3	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0164077_3	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0164077_3	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0164077_4	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0164077_5	PHROG	phrog_15198	NA	unknown function
UHGV-0164077_5	UniRef90	UniRef90_A0A2V2D7Q1	NA	NA
UHGV-0164077_5	Pfam	PF04448	NA	DUF551
UHGV-0164077_7	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0164077_7	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0164077_7	UniRef90	UniRef90_UPI0018C4DCA4	Lar family restriction alleviation protein	NA
UHGV-0164077_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164077_7	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0164077_7	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0164077_7	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0164077_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0164077_11	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0164077_11	UniRef90	UniRef90_A0A2S0KPA3	Chromosome partitioning protein ParB	NA
UHGV-0164077_11	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0164077_11	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0164077_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0164077_11	Pfam	PF14386	NA	DUF4417
UHGV-0164077_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0164077_11	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0164077_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164077_14	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0164077_14	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0164077_14	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0164077_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164077_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0164077_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164077_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164077_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164077_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0164077_15	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0164077_15	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0164077_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0164077_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0164077_16	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0164077_16	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0164077_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0164077_16	COG	COG2369	NA	NA
UHGV-0164077_16	Structural annotation	PF06152	NA	NA
UHGV-0164077_17	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0164077_17	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0164077_20	PHROG	phrog_21718	NA	unknown function
UHGV-0164077_20	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0164077_22	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0164077_23	PHROG	phrog_20016	NA	unknown function
UHGV-0164077_23	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0164077_23	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0164077_24	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0164077_26	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0164077_26	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0164077_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0164077_27	PHROG	phrog_247	major head protein	head and packaging
UHGV-0164077_27	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0164077_27	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0164077_27	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0164077_27	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0164077_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0164077_28	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0164077_29	PHROG	phrog_18218	NA	unknown function
UHGV-0164077_29	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0164077_29	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0164077_29	Structural annotation	PF06946	NA	NA
UHGV-0164077_31	PHROG	phrog_3366	NA	unknown function
UHGV-0164077_31	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0164077_31	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0164077_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0164077_32	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0164077_32	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0164077_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0164077_32	Structural annotation	PF11114	NA	NA
UHGV-0164077_33	PHROG	phrog_3266	tail completion	connector
UHGV-0164077_33	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0164077_33	Structural annotation	PF12691	NA	NA
UHGV-0164077_34	PHROG	phrog_3099	NA	unknown function
UHGV-0164077_34	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0164077_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0164077_35	PHROG	phrog_11299	NA	unknown function
UHGV-0164077_35	eggNOG-mapper	476272.RUMHYD_01783	NA	NA
UHGV-0164077_35	Structural annotation	PF10666	NA	NA
UHGV-0164077_36	PHROG	phrog_706	NA	unknown function
UHGV-0164077_36	UniRef90	UniRef90_UPI001D1485B4	bacteriophage Gp15 family protein	NA
UHGV-0164077_36	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0164077_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0164077_36	Structural annotation	PF06854	NA	NA
UHGV-0164077_37	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0164077_37	PHROG	phrog_37543	NA	unknown function
UHGV-0164077_37	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0164077_37	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0164077_37	COG	COG5412	Phage-related protein	NA
UHGV-0164077_38	PHROG	phrog_1194	NA	unknown function
UHGV-0164077_38	eggNOG-mapper	702450.CUW_0546	NA	NA
UHGV-0164077_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0164077_39	PHROG	phrog_6616	tail protein	tail
UHGV-0164077_39	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0164077_39	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0164077_40	PHROG	phrog_18444	NA	unknown function
UHGV-0164077_40	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0164077_40	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0164077_41	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0164077_42	PHROG	phrog_14030	NA	unknown function
UHGV-0164077_42	UniRef90	UniRef90_A0A417IER1	PG_binding_1 domain-containing protein	NA
UHGV-0164077_42	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0164077_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0164077_42	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0164077_42	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0164077_44	PHROG	phrog_2329	NA	unknown function
UHGV-0164077_44	UniRef90	UniRef90_A0A7X5CB73	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0164077_44	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0164077_44	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0164077_45	KOfam	K14059	int; integrase	NA
UHGV-0164077_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0164077_45	UniRef90	UniRef90_UPI00164C6C3A	site-specific integrase	NA
UHGV-0164077_45	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0164077_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164077_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0164077_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0164077_46	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0164077_46	PHROG	phrog_10292	NA	unknown function
UHGV-0164077_46	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-0164077_46	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0164077_46	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0164077_46	Pfam	PF05154	TM2 domain	TM2
UHGV-0164077_46	COG	COG2314	NA	NA
UHGV-0164077_47	UniRef90	UniRef90_A0A3D5TFB0	HTH cro/C1-type domain-containing protein	NA
UHGV-0164077_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164077_47	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0164077_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164077_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164077_48	UniRef90	UniRef90_UPI00156FD589	helix-turn-helix domain-containing protein	NA
UHGV-0164077_48	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164077_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164077_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164077_49	UniRef90	UniRef90_A0A3R6RM60	XRE family transcriptional regulator	NA
UHGV-0164077_49	eggNOG-mapper	1298920.KI911353_gene527	NA	NA
UHGV-0164077_49	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0164077_52	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0164077_53	PHROG	phrog_7024	NA	unknown function
UHGV-0164077_54	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0164077_54	PHROG	phrog_19890	NA	unknown function
UHGV-0164077_54	UniRef90	UniRef90_A0A1C6KI68	Invasion protein IagB	NA
UHGV-0164077_54	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0164077_54	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0164077_54	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0164077_54	Structural annotation	PF01464, MF_01616, NF008670, COG0741	NA	NA
UHGV-0164077_56	PHROG	phrog_674	NA	unknown function
UHGV-0164077_56	UniRef90	UniRef90_A0A3A9FIT5	NA	NA
UHGV-0164077_56	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0164077_56	Pfam	PF07083	NA	DUF1351
UHGV-0164077_56	Structural annotation	PF07083	NA	NA
UHGV-0164077_57	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164077_57	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0164077_57	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0164077_57	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0164077_58	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0164077_58	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0164077_58	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0164077_59	PHROG	phrog_7566	NA	unknown function
UHGV-0164077_59	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0164077_59	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0164077_60	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164077_60	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0164077_61	PHROG	phrog_1163	NA	unknown function
UHGV-0164077_61	UniRef90	UniRef90_A0A3T0M2N9	Phg_2220_C domain-containing protein	NA
UHGV-0164077_61	eggNOG-mapper	411468.CLOSCI_00311	Transcriptional regulator	NA
UHGV-0164077_61	Pfam	PF19808	NA	DUF6291
UHGV-0164077_61	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0164077_61	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0164077_61	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0164077_61	Structural annotation	PF19808	NA	NA
UHGV-0164077_62	Structural annotation	PF06257, MF_00754, TIGR02728, COG4466	NA	NA
UHGV-0164077_64	PHROG	phrog_7964	NA	unknown function
UHGV-0164077_64	UniRef90	UniRef90_A0A412PKE0	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0164077_64	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0164077_64	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0164077_64	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA