UHGV-0164088

Genome information

Genome length 33,107 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9639

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164088
vOTU ID	vOTU-060626
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_541356
BioSample	SAMN06328470
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9639
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.58
Jumbo phage	No

Genome content
Genome length	33,107 bps
GC content	41.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.81%
Average CDS length	574.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164088_1	PHROG	phrog_18218	NA	unknown function
UHGV-0164088_1	UniRef90	UniRef90_A0A4Q5C4Q1	Ribonuclease	NA
UHGV-0164088_1	eggNOG-mapper	665950.HMPREF1025_02514	NA	NA
UHGV-0164088_1	Structural annotation	PF06946	NA	NA
UHGV-0164088_2	PHROG	phrog_1863	NA	unknown function
UHGV-0164088_2	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0164088_3	PHROG	phrog_30034	NA	unknown function
UHGV-0164088_3	UniRef90	UniRef90_A5KPB5	Carbohydrate binding domain protein	NA
UHGV-0164088_3	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0164088_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0164088_3	Structural annotation	PF10618	NA	NA
UHGV-0164088_5	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0164088_5	PHROG	phrog_11157	NA	unknown function
UHGV-0164088_5	UniRef90	UniRef90_UPI001EE14F3A	Ig-like domain-containing protein	NA
UHGV-0164088_5	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0164088_5	Pfam	PF17957	Bacterial Ig domain	Big_7
UHGV-0164088_5	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0164088_5	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0164088_5	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0164088_7	PHROG	phrog_13141	NA	unknown function
UHGV-0164088_7	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0164088_7	eggNOG-mapper	665950.HMPREF1025_02519	NA	NA
UHGV-0164088_7	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0164088_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0164088_8	UniRef90	UniRef90_UPI001C3AB50C	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0164088_8	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0164088_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0164088_8	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0164088_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0164088_9	UniRef90	UniRef90_UPI001EDFA8F1	phage tail protein	NA
UHGV-0164088_9	eggNOG-mapper	665950.HMPREF1025_02521	NA	NA
UHGV-0164088_9	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0164088_10	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0164088_10	PHROG	phrog_5218	NA	unknown function
UHGV-0164088_10	UniRef90	UniRef90_UPI001D06AF86	phage tail tape measure protein	NA
UHGV-0164088_10	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0164088_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0164088_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0164088_10	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0164088_12	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0164088_12	Structural annotation	PF11836	NA	NA
UHGV-0164088_13	PHROG	phrog_88	major tail protein	tail
UHGV-0164088_13	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0164088_13	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0164088_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0164088_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0164088_14	PHROG	phrog_88	major tail protein	tail
UHGV-0164088_14	UniRef90	UniRef90_UPI001E441DEC	major tail protein	NA
UHGV-0164088_14	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0164088_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0164088_14	COG	COG5492	NA	NA
UHGV-0164088_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0164088_15	PHROG	phrog_78	tail terminator	connector
UHGV-0164088_15	eggNOG-mapper	1158606.I579_01927	NA	NA
UHGV-0164088_15	Structural annotation	PF05657	NA	NA
UHGV-0164088_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164088_16	UniRef90	UniRef90_UPI001D07550A	HK97 gp10 family phage protein	NA
UHGV-0164088_16	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0164088_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0164088_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0164088_16	Structural annotation	TIGR01725	NA	NA
UHGV-0164088_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0164088_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0164088_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0164088_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0164088_18	PHROG	phrog_5223	neck protein	connector
UHGV-0164088_18	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0164088_18	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-0164088_19	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0164088_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0164088_20	UniRef90	UniRef90_UPI001D065474	phage major capsid protein	NA
UHGV-0164088_20	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0164088_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0164088_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0164088_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0164088_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0164088_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0164088_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0164088_21	UniRef90	UniRef90_UPI001D061BF6	Clp protease ClpP	NA
UHGV-0164088_21	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0164088_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0164088_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0164088_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0164088_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0164088_22	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-0164088_22	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0164088_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0164088_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0164088_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0164088_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0164088_23	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0164088_23	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0164088_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0164088_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0164088_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0164088_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0164088_24	PHROG	phrog_1066	NA	unknown function
UHGV-0164088_24	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0164088_24	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0164088_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164088_25	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0164088_25	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0164088_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0164088_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164088_27	UniRef90	UniRef90_A0A564VXK1	Sigma70_r4 domain-containing protein	NA
UHGV-0164088_27	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-0164088_27	Pfam	PF07374	NA	DUF1492
UHGV-0164088_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0164088_27	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0164088_28	PHROG	phrog_8684	NA	unknown function
UHGV-0164088_30	PHROG	phrog_17690	NA	unknown function
UHGV-0164088_30	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0164088_31	PHROG	phrog_7566	NA	unknown function
UHGV-0164088_31	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0164088_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0164088_32	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0164088_32	UniRef90	UniRef90_A0A828T4X7	ParB domain-containing protein	NA
UHGV-0164088_32	eggNOG-mapper	665950.HMPREF1025_02549	Belongs to the ParB family	NA
UHGV-0164088_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0164088_32	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0164088_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0164088_32	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0164088_34	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0164088_34	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0164088_34	UniRef90	UniRef90_A0A642FP13	Ribonuclease HI	NA
UHGV-0164088_34	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0164088_34	Pfam	PF00075	RNase H	RNase_H
UHGV-0164088_34	COG	COG0328	Ribonuclease HI	NA
UHGV-0164088_34	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0164088_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164088_35	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0164088_35	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0164088_39	PHROG	phrog_22934	NA	unknown function
UHGV-0164088_41	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-0164088_42	eggNOG-mapper	411468.CLOSCI_01459	NA	NA
UHGV-0164088_43	PHROG	phrog_585	NA	unknown function
UHGV-0164088_43	UniRef90	UniRef90_A0A7G9G8R3	NA	NA
UHGV-0164088_43	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0164088_43	Pfam	PF10711	NA	DUF2513
UHGV-0164088_46	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164088_46	UniRef90	UniRef90_UPI001C3A6F66	NA	NA
UHGV-0164088_46	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0164088_46	Structural annotation	PF06573	NA	NA
UHGV-0164088_47	PHROG	phrog_3882	NA	unknown function
UHGV-0164088_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164088_48	UniRef90	UniRef90_A0A1Q6K9L5	Transcriptional regulator	NA
UHGV-0164088_48	eggNOG-mapper	903814.ELI_3146	DNA-binding helix-turn-helix protein	NA
UHGV-0164088_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164088_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164088_48	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0164088_50	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0164088_50	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0164088_50	UniRef90	UniRef90_A0A174C5C9	PemK-like protein	NA
UHGV-0164088_50	eggNOG-mapper	665950.HMPREF1025_02564	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0164088_50	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0164088_50	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0164088_50	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0164088_52	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0164088_52	PHROG	phrog_8036	NA	unknown function
UHGV-0164088_52	UniRef90	UniRef90_A0A174C9Y4	DNA damage-inducible protein D	NA
UHGV-0164088_52	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0164088_52	AcrCatalog	cluster_17589	NA	NA
UHGV-0164088_52	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0164088_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164088_52	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0164088_52	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0164088_52	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0164088_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164088_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0164088_53	UniRef90	UniRef90_A7B6L4	Resolvase, N-terminal domain protein	NA
UHGV-0164088_53	eggNOG-mapper	665950.HMPREF1025_02566	Resolvase, N terminal domain	NA
UHGV-0164088_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164088_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0164088_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0164088_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164088_53	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA