UHGV-0164126

Genome information

Genome length 37,955 bps

CDS count 54

Completeness 84.10% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164126
vOTU ID	vOTU-022285
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_515257
BioSample	SAMN06164425
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.63
Jumbo phage	No

Genome content
Genome length	37,955 bps
GC content	41.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.62%
Average CDS length	640.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164126_1	KOfam	K07487	K07487; transposase	NA
UHGV-0164126_1	PHROG	phrog_8928	NA	unknown function
UHGV-0164126_1	UniRef90	UniRef90_UPI000FF04091	transposase	NA
UHGV-0164126_1	eggNOG-mapper	1256908.HMPREF0373_00498	NA	NA
UHGV-0164126_1	Pfam	PF05598	NA	DUF772
UHGV-0164126_1	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0164126_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0164126_4	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0164126_4	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0164126_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0164126_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164126_5	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0164126_5	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0164126_5	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0164126_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164126_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0164126_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164126_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164126_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164126_6	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164126_6	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-0164126_6	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0164126_6	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0164126_6	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0164126_7	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0164126_7	UniRef90	UniRef90_A0A8J6P944	Helix-turn-helix domain-containing protein	NA
UHGV-0164126_7	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-0164126_7	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0164126_7	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0164126_7	Structural annotation	PF07141	NA	NA
UHGV-0164126_14	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0164126_14	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0164126_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0164126_14	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0164126_16	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0164126_16	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0164126_16	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0164126_16	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-0164126_16	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0164126_16	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0164126_16	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0164126_16	Structural annotation	PF05970, PF18350, MF_03176, TIGR02768, COG0507	NA	NA
UHGV-0164126_17	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0164126_17	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0164126_17	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0164126_17	Pfam	PF06048	NA	DUF927
UHGV-0164126_17	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0164126_17	COG	COG5519	NA	NA
UHGV-0164126_17	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0164126_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0164126_18	PHROG	phrog_11992	NA	unknown function
UHGV-0164126_18	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0164126_18	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0164126_18	PADLOC	drt-UG29	DRT	DRT
UHGV-0164126_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0164126_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0164126_18	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0164126_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0164126_19	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0164126_19	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0164126_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0164126_19	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0164126_20	PHROG	phrog_18107	NA	unknown function
UHGV-0164126_20	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0164126_20	Structural annotation	PF05037	NA	NA
UHGV-0164126_21	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164126_21	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0164126_21	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0164126_21	Structural annotation	PF08423, TIGR01618	NA	NA
UHGV-0164126_22	PHROG	phrog_506	transposase	integration and excision
UHGV-0164126_22	UniRef90	UniRef90_A0A6L8T6Z2	IS200/IS605 family element transposase accessory protein TnpB	NA
UHGV-0164126_22	eggNOG-mapper	457412.RSAG_04545	Transposase, IS605 OrfB family	NA
UHGV-0164126_22	PADLOC	Type_V_V_U3	Cas12	CRISPR-CAS
UHGV-0164126_22	NCBIFam	TIGR01766.2	IS200/IS605 family accessory protein TnpB-related protein	NA
UHGV-0164126_22	COG	COG0675	Transposase	NA
UHGV-0164126_22	Structural annotation	PF18516, MF_00034, NF040570, COG0675	NA	NA
UHGV-0164126_23	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0164126_23	PHROG	phrog_2577	transposase	integration and excision
UHGV-0164126_23	UniRef90	UniRef90_T5LZ26	Y1_Tnp domain-containing protein	NA
UHGV-0164126_23	eggNOG-mapper	457412.RSAG_03523	Transposase IS200 like	NA
UHGV-0164126_23	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0164126_23	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0164126_23	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0164126_28	PHROG	phrog_6058	NA	unknown function
UHGV-0164126_28	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0164126_28	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0164126_30	UniRef90	UniRef90_A0A395X814	XRE family transcriptional regulator	NA
UHGV-0164126_30	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164126_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0164126_30	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0164126_32	PHROG	phrog_9589	endolysin	lysis
UHGV-0164126_32	UniRef90	UniRef90_A0A6N9LGV5	CHAP domain-containing protein	NA
UHGV-0164126_32	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0164126_32	Pfam	PF05257	CHAP domain	CHAP
UHGV-0164126_32	COG	COG3942	Surface antigen	NA
UHGV-0164126_32	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0164126_33	Structural annotation	NF040910	NA	NA
UHGV-0164126_35	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0164126_35	PHROG	phrog_819	tail protein	tail
UHGV-0164126_35	UniRef90	UniRef90_A0A3A6GQL7	Fibronectin type-III domain-containing protein	NA
UHGV-0164126_35	eggNOG-mapper	1508644.SFBmNL_00815	NA	NA
UHGV-0164126_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0164126_35	Pfam	PF19789	NA	DUF6273
UHGV-0164126_35	Structural annotation	PF19789, PF16323, COG2033	NA	NA
UHGV-0164126_36	PHROG	phrog_18444	NA	unknown function
UHGV-0164126_37	PHROG	phrog_6616	tail protein	tail
UHGV-0164126_37	UniRef90	UniRef90_A0A352BLY8	Peptidase S74 domain-containing protein	NA
UHGV-0164126_37	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0164126_37	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0164126_38	PHROG	phrog_1194	NA	unknown function
UHGV-0164126_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0164126_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0164126_39	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0164126_39	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0164126_39	COG	COG1511	NA	NA
UHGV-0164126_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0164126_40	PHROG	phrog_706	NA	unknown function
UHGV-0164126_40	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0164126_40	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0164126_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0164126_40	Structural annotation	PF06854	NA	NA
UHGV-0164126_41	PHROG	phrog_11299	NA	unknown function
UHGV-0164126_41	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0164126_41	Structural annotation	PF10666	NA	NA
UHGV-0164126_42	PHROG	phrog_3099	NA	unknown function
UHGV-0164126_42	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0164126_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0164126_43	PHROG	phrog_3266	tail completion	connector
UHGV-0164126_43	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0164126_43	Structural annotation	PF12691	NA	NA
UHGV-0164126_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0164126_44	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0164126_44	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0164126_44	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0164126_44	Structural annotation	PF11114	NA	NA
UHGV-0164126_45	PHROG	phrog_3366	NA	unknown function
UHGV-0164126_45	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0164126_45	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0164126_46	PHROG	phrog_1129	holin	lysis
UHGV-0164126_46	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0164126_46	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0164126_46	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0164126_46	Structural annotation	PF06946	NA	NA
UHGV-0164126_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0164126_48	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0164126_49	PHROG	phrog_544	major head protein	head and packaging
UHGV-0164126_49	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0164126_49	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0164126_49	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0164126_49	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0164126_50	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0164126_50	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0164126_50	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0164126_50	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0164126_51	PHROG	phrog_28802	NA	unknown function
UHGV-0164126_51	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0164126_53	PHROG	phrog_3754	NA	unknown function
UHGV-0164126_53	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0164126_54	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0164126_54	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0164126_54	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0164126_54	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0164126_54	COG	COG2369	NA	NA
UHGV-0164126_54	Structural annotation	PF06152	NA	NA