UHGV-0164153

Genome information

Genome length 29,798 bps

CDS count 56

Completeness 51.93% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164153
vOTU ID	vOTU-027729
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_554214
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.1
Jumbo phage	No

Genome content
Genome length	29,798 bps
GC content	36.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.53%
Average CDS length	490.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164153_1	KOfam	K03649	mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]	NA
UHGV-0164153_1	UniRef90	UniRef90_A0A175A4R3	DNA-deoxyinosine glycosylase	NA
UHGV-0164153_1	eggNOG-mapper	515620.EUBELI_00700	Uracil DNA glycosylase superfamily	NA
UHGV-0164153_1	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0164153_1	NCBIFam	TIGR04274.1	DNA-deoxyinosine glycosylase	NA
UHGV-0164153_1	COG	COG3663	G:T/U-mismatch repair DNA glycosylase	NA
UHGV-0164153_2	KOfam	K14059	int; integrase	NA
UHGV-0164153_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0164153_2	UniRef90	UniRef90_A0A8D9PGQ3	Integrase	NA
UHGV-0164153_2	eggNOG-mapper	411461.DORFOR_02986	NA	NA
UHGV-0164153_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164153_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0164153_2	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0164153_3	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-0164153_3	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0164153_5	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0164153_6	UniRef90	UniRef90_A0A292SPP9	SpoVT-AbrB domain-containing protein	NA
UHGV-0164153_7	PHROG	phrog_9804	NA	unknown function
UHGV-0164153_7	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-0164153_7	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0164153_7	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0164153_7	Structural annotation	PF11417	NA	NA
UHGV-0164153_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0164153_9	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0164153_9	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-0164153_9	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0164153_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0164153_11	PHROG	phrog_17284	NA	unknown function
UHGV-0164153_11	UniRef90	UniRef90_A0A8D9UIK6	Cytosine specific methyltransferase	NA
UHGV-0164153_11	eggNOG-mapper	1123299.AUKZ01000016_gene1713	C-5 cytosine-specific DNA methylase	NA
UHGV-0164153_11	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0164153_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0164153_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0164153_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0164153_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0164153_13	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0164153_13	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0164153_13	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0164153_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0164153_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0164153_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0164153_13	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0164153_15	PHROG	phrog_19106	NA	unknown function
UHGV-0164153_15	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0164153_15	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0164153_15	Structural annotation	TIGR01453	NA	NA
UHGV-0164153_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164153_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164153_18	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0164153_18	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0164153_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164153_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0164153_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164153_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0164153_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0164153_20	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0164153_20	eggNOG-mapper	500632.CLONEX_01572	NA	NA
UHGV-0164153_20	Pfam	PF07866	NA	DUF1653
UHGV-0164153_20	COG	COG4728	NA	NA
UHGV-0164153_20	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0164153_22	UniRef90	UniRef90_A0A355TJG3	ASCH domain-containing protein	NA
UHGV-0164153_22	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-0164153_22	Pfam	PF04266	ASCH domain	ASCH
UHGV-0164153_22	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0164153_22	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0164153_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164153_24	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0164153_24	Structural annotation	PF09038	NA	NA
UHGV-0164153_27	PHROG	phrog_1578	NA	unknown function
UHGV-0164153_27	eggNOG-mapper	637730.C8XUQ6_9CAUD	NA	NA
UHGV-0164153_28	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0164153_28	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0164153_28	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0164153_28	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0164153_28	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0164153_29	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0164153_29	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0164153_29	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0164153_29	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0164153_29	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0164153_31	PHROG	phrog_25456	NA	unknown function
UHGV-0164153_32	KOfam	K06940	NA	NA
UHGV-0164153_32	PHROG	phrog_32498	NA	unknown function
UHGV-0164153_32	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0164153_32	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0164153_32	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0164153_33	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164153_33	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0164153_33	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0164153_33	Pfam	PF03837	RecT family	RecT
UHGV-0164153_33	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0164153_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0164153_33	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0164153_36	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0164153_36	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164153_36	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0164153_36	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0164153_36	Pfam	PF13476	AAA domain	AAA_23
UHGV-0164153_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0164153_36	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0164153_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164153_38	PHROG	phrog_26861	NA	unknown function
UHGV-0164153_38	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-0164153_38	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-0164153_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164153_38	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0164153_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164153_38	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0164153_40	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-0164153_40	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0164153_40	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0164153_41	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0164153_41	PHROG	phrog_14642	endolysin	lysis
UHGV-0164153_41	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-0164153_41	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-0164153_41	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0164153_41	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0164153_41	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0164153_42	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0164153_42	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0164153_42	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0164153_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164153_42	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0164153_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0164153_42	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0164153_43	UniRef90	UniRef90_A0A8D9UIR6	DNA-binding transcriptional regulator	NA
UHGV-0164153_43	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0164153_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0164153_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164153_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164153_44	UniRef90	UniRef90_A0A8D9UIK2	HTH cro/C1-type domain-containing protein	NA
UHGV-0164153_44	eggNOG-mapper	445974.CLORAM_02966	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164153_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164153_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164153_44	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0164153_45	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-0164153_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0164153_46	PHROG	phrog_291	endolysin	lysis
UHGV-0164153_46	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0164153_46	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0164153_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0164153_46	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0164153_46	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0164153_48	PHROG	phrog_2566	NA	unknown function
UHGV-0164153_49	PHROG	phrog_16267	NA	unknown function
UHGV-0164153_49	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0164153_49	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0164153_49	COG	COG4926	Phage-related protein	NA
UHGV-0164153_49	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0164153_50	PHROG	phrog_1401	NA	unknown function
UHGV-0164153_50	Structural annotation	PF07761	NA	NA
UHGV-0164153_51	PHROG	phrog_1194	NA	unknown function
UHGV-0164153_51	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0164153_51	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0164153_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0164153_52	UniRef90	UniRef90_A0A8D9PG17	Prophage antirepressor	NA
UHGV-0164153_52	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0164153_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164153_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0164153_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0164153_52	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0164153_53	Structural annotation	PF07875	NA	NA
UHGV-0164153_54	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-0164153_54	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0164153_56	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0164153_56	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA