UHGV-0164216

Genome information

Genome length 32,012 bps

CDS count 43

Completeness 86.56% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164216
vOTU ID	vOTU-028173
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_558647
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.63
Jumbo phage	No

Genome content
Genome length	32,012 bps
GC content	32.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.55%
Average CDS length	693.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164216_1	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0164216_1	UniRef90	UniRef90_UPI00136857CB	BppU family phage baseplate upper protein	NA
UHGV-0164216_1	eggNOG-mapper	944562.HMPREF9102_0426	Calcineurin-like phosphoesterase	NA
UHGV-0164216_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0164216_1	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0164216_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0164216_3	PHROG	phrog_291	endolysin	lysis
UHGV-0164216_3	UniRef90	UniRef90_V6DMZ5	Phage lysin, glycosyl hydrolase, family 25	NA
UHGV-0164216_3	eggNOG-mapper	1605.Lani381_0871	Prophage endopeptidase tail	NA
UHGV-0164216_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0164216_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0164216_3	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0164216_4	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0164216_4	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0164216_4	UniRef90	UniRef90_A0A1Y0F8H3	NlpC/P60 domain-containing protein	NA
UHGV-0164216_4	eggNOG-mapper	575594.ACOH01000003_gene779	Prophage endopeptidase tail	NA
UHGV-0164216_4	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0164216_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0164216_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0164216_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0164216_5	UniRef90	UniRef90_A0A3C1IA45	Phage tail protein	NA
UHGV-0164216_5	eggNOG-mapper	908339.HMPREF9265_0934	Phage tail protein	NA
UHGV-0164216_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0164216_5	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0164216_6	KOfam	K05637	LAMA1_2; laminin, alpha 1/2	NA
UHGV-0164216_6	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0164216_6	UniRef90	UniRef90_V6DK38	Phage tail length tape-measure protein	NA
UHGV-0164216_6	eggNOG-mapper	575594.ACOH01000003_gene781	domain protein	NA
UHGV-0164216_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0164216_6	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0164216_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0164216_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0164216_6	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-0164216_8	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0164216_8	eggNOG-mapper	1423814.HMPREF0549_1791	Phage tail assembly chaperone protein, TAC	NA
UHGV-0164216_8	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0164216_9	PHROG	phrog_238	major tail protein	tail
UHGV-0164216_9	UniRef90	UniRef90_V6DJW8	Prophage Lp2 protein 45	NA
UHGV-0164216_9	eggNOG-mapper	1423775.BAMN01000025_gene2821	NA	NA
UHGV-0164216_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0164216_10	eggNOG-mapper	1423814.HMPREF0549_1789	NA	NA
UHGV-0164216_10	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0164216_11	eggNOG-mapper	349123.Lreu23DRAFT_3991	NA	NA
UHGV-0164216_12	eggNOG-mapper	575594.ACOH01000003_gene787	NA	NA
UHGV-0164216_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0164216_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0164216_13	UniRef90	UniRef90_V6DN04	Prophage Lp1 protein 43	NA
UHGV-0164216_13	eggNOG-mapper	349123.Lreu23DRAFT_3993	Phage gp6-like head-tail connector protein	NA
UHGV-0164216_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0164216_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0164216_14	PHROG	phrog_247	major head protein	head and packaging
UHGV-0164216_14	UniRef90	UniRef90_V6DJX4	Minor capsid protein	NA
UHGV-0164216_14	eggNOG-mapper	1423814.HMPREF0549_1785	NA	NA
UHGV-0164216_14	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0164216_15	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0164216_15	UniRef90	UniRef90_A0A848PCP9	NA	NA
UHGV-0164216_15	eggNOG-mapper	1423814.HMPREF0549_1784	NA	NA
UHGV-0164216_15	Pfam	PF14265	NA	DUF4355
UHGV-0164216_15	Structural annotation	PF14265	NA	NA
UHGV-0164216_16	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0164216_16	UniRef90	UniRef90_V6DN08	Phage putative head morphogenesis protein, SPP1 gp7	NA
UHGV-0164216_16	eggNOG-mapper	349123.Lreu23DRAFT_3997	Phage Mu protein F like protein	NA
UHGV-0164216_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0164216_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0164216_16	COG	COG2369	NA	NA
UHGV-0164216_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0164216_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164216_17	UniRef90	UniRef90_V6DJX9	Phage portal	NA
UHGV-0164216_17	eggNOG-mapper	349123.Lreu23DRAFT_3998	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164216_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164216_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0164216_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0164216_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164216_18	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0164216_18	UniRef90	UniRef90_A0A1Y0F8W2	Terminase	NA
UHGV-0164216_18	eggNOG-mapper	60520.HR47_13505	Terminase-like family	NA
UHGV-0164216_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164216_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164216_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164216_18	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0164216_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0164216_19	UniRef90	UniRef90_A0A1Y0F8T2	Small terminase subunit	NA
UHGV-0164216_19	eggNOG-mapper	1423724.BAMM01000023_gene1916	transposase activity	NA
UHGV-0164216_19	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0164216_19	Structural annotation	PF07141	NA	NA
UHGV-0164216_20	KOfam	K07128	NA	NA
UHGV-0164216_20	PHROG	phrog_11143	NA	unknown function
UHGV-0164216_20	UniRef90	UniRef90_A0A8F5I247	ABC transporter ATP-binding protein	NA
UHGV-0164216_20	eggNOG-mapper	201846.B5SP23_9CAUD	ATPase activity	NA
UHGV-0164216_20	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0164216_20	Structural annotation	MF_01005, NF007438, COG1136	NA	NA
UHGV-0164216_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0164216_21	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0164216_21	UniRef90	UniRef90_UPI0019560A5A	ParB N-terminal domain-containing protein	NA
UHGV-0164216_21	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0164216_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0164216_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0164216_21	COG	COG0863	DNA modification methylase	NA
UHGV-0164216_21	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0164216_22	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0164216_22	UniRef90	UniRef90_A0A6A8LQW6	Transcriptional regulator	NA
UHGV-0164216_22	eggNOG-mapper	1423755.BAML01000004_gene394	Phage transcriptional regulator, ArpU family	NA
UHGV-0164216_22	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0164216_22	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0164216_26	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0164216_27	PHROG	phrog_2164	NA	unknown function
UHGV-0164216_32	Structural annotation	PF08207	NA	NA
UHGV-0164216_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164216_33	UniRef90	UniRef90_A0A8F5E951	NA	NA
UHGV-0164216_33	eggNOG-mapper	1423724.BAMM01000020_gene1814	NA	NA
UHGV-0164216_33	Pfam	PF06356	NA	DUF1064
UHGV-0164216_33	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0164216_35	PHROG	phrog_1029	NA	unknown function
UHGV-0164216_35	eggNOG-mapper	1158614.I592_02291	NA	NA
UHGV-0164216_35	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0164216_36	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0164216_36	UniRef90	UniRef90_A0A8F5I1F8	Replication terminator protein	NA
UHGV-0164216_36	eggNOG-mapper	1231336.L248_2133	NA	NA
UHGV-0164216_37	eggNOG-mapper	1423724.BAMM01000020_gene1810	NA	NA
UHGV-0164216_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0164216_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0164216_38	UniRef90	UniRef90_A0A1V9TNF7	SF4 helicase domain-containing protein	NA
UHGV-0164216_38	eggNOG-mapper	1423724.BAMM01000020_gene1809	DnaB-like helicase C terminal domain	NA
UHGV-0164216_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0164216_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0164216_38	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0164216_39	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164216_39	UniRef90	UniRef90_UPI0015BBC14D	conserved phage C-terminal domain-containing protein	NA
UHGV-0164216_39	eggNOG-mapper	1220551.SCHR_00760	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0164216_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0164216_39	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0164216_39	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0164216_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164216_40	PHROG	phrog_398	NA	unknown function
UHGV-0164216_40	UniRef90	UniRef90_UPI000BB0124B	putative HNHc nuclease	NA
UHGV-0164216_40	eggNOG-mapper	1423724.BAMM01000020_gene1807	Putative HNHc nuclease	NA
UHGV-0164216_40	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0164216_40	Structural annotation	PF16784	NA	NA
UHGV-0164216_41	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164216_41	UniRef90	UniRef90_UPI00136F7FAF	NA	NA
UHGV-0164216_41	eggNOG-mapper	1158604.I591_01790	NA	NA
UHGV-0164216_41	Pfam	PF05037	NA	DUF669
UHGV-0164216_41	Structural annotation	PF05037, NF005241, COG0629	NA	NA
UHGV-0164216_42	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164216_42	UniRef90	UniRef90_UPI0013715596	AAA family ATPase	NA
UHGV-0164216_42	eggNOG-mapper	349123.Lreu23DRAFT_4022	AAA domain	NA
UHGV-0164216_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-0164216_42	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0164216_42	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA