UHGV-0164299

Genome information

vOTU vOTU-019662

Genome length 31,432 bps

CDS count 65

Completeness 54.52% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164299
vOTU ID	vOTU-019662
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_526163
BioSample	SAMN06165087
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.73
Jumbo phage	No

Genome content
Genome length	31,432 bps
GC content	47.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	82.97%
Average CDS length	406.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164299_1	PHROG	phrog_5765	NA	unknown function
UHGV-0164299_1	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0164299_1	eggNOG-mapper	748727.CLJU_c31430	NA	NA
UHGV-0164299_1	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0164299_5	PHROG	phrog_16490	NA	unknown function
UHGV-0164299_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0164299_6	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0164299_7	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0164299_8	PHROG	phrog_7070	NA	unknown function
UHGV-0164299_8	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0164299_10	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0164299_10	PHROG	phrog_3757	NA	unknown function
UHGV-0164299_10	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0164299_10	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0164299_10	PADLOC	IetA_00002	NA	ietAS
UHGV-0164299_10	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0164299_10	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0164299_10	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0164299_11	Structural annotation	PF07878	NA	NA
UHGV-0164299_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0164299_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0164299_13	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-0164299_13	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0164299_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-0164299_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0164299_13	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0164299_15	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164299_15	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0164299_15	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0164299_15	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0164299_15	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0164299_15	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0164299_15	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0164299_16	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0164299_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164299_16	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0164299_19	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0164299_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164299_20	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0164299_20	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0164299_20	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0164299_20	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0164299_21	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0164299_21	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0164299_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164299_21	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0164299_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0164299_22	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0164299_22	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0164299_22	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0164299_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0164299_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0164299_22	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0164299_22	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0164299_22	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0164299_23	Structural annotation	PF10922	NA	NA
UHGV-0164299_25	Structural annotation	TIGR03826	NA	NA
UHGV-0164299_27	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0164299_27	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0164299_29	Structural annotation	PF14143	NA	NA
UHGV-0164299_30	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0164299_30	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0164299_30	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0164299_32	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0164299_32	Structural annotation	PF13451	NA	NA
UHGV-0164299_33	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164299_33	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0164299_33	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0164299_33	Pfam	PF04404	ERF superfamily	ERF
UHGV-0164299_33	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0164299_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164299_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164299_34	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0164299_34	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0164299_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164299_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0164299_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164299_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0164299_34	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0164299_35	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0164299_35	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0164299_35	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0164299_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0164299_36	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0164299_37	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164299_37	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0164299_37	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0164299_37	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0164299_44	Structural annotation	PF16677	NA	NA
UHGV-0164299_46	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0164299_46	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0164299_46	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0164299_46	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0164299_51	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0164299_51	PHROG	phrog_11947	NA	unknown function
UHGV-0164299_51	eggNOG-mapper	584708.Apau_0460	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0164299_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164299_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164299_51	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0164299_53	Structural annotation	NF041588	NA	NA
UHGV-0164299_55	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0164299_55	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-0164299_55	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164299_55	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0164299_55	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0164299_55	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0164299_56	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0164299_56	Pfam	PF19808	NA	DUF6291
UHGV-0164299_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164299_56	Structural annotation	PF19808	NA	NA
UHGV-0164299_57	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0164299_57	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0164299_57	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0164299_57	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0164299_57	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0164299_57	COG	COG0305	Replicative DNA helicase	NA
UHGV-0164299_57	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0164299_58	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0164299_58	UniRef90	UniRef90_A0A373P4F8	RepA_N domain-containing protein	NA
UHGV-0164299_58	eggNOG-mapper	1189612.A33Q_3266	NA	NA
UHGV-0164299_58	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0164299_58	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0164299_60	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164299_60	COG	COG5377	Phage-related protein, predicted endonuclease	NA