UHGV-0164332

Genome information

Genome length 18,064 bps

CDS count 30

Completeness 52.50% (medium-quality)

geNomad score 0.9631

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164332
vOTU ID	vOTU-028180
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_535315
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9631
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.15
Jumbo phage	No

Genome content
Genome length	18,064 bps
GC content	44.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	89.53%
Average CDS length	544.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164332_2	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0164332_2	UniRef90	UniRef90_A0A174ZXQ8	Minor capsid protein	NA
UHGV-0164332_2	eggNOG-mapper	935836.JAEL01000021_gene1491	Minor capsid protein	NA
UHGV-0164332_2	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0164332_2	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0164332_2	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0164332_3	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0164332_3	eggNOG-mapper	997296.PB1_16199	NA	NA
UHGV-0164332_5	PHROG	phrog_422	major head protein	head and packaging
UHGV-0164332_5	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0164332_5	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0164332_5	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0164332_6	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0164332_6	eggNOG-mapper	195103.CPF_0955	NA	NA
UHGV-0164332_7	PHROG	phrog_30343	NA	unknown function
UHGV-0164332_7	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0164332_7	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0164332_8	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA
UHGV-0164332_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0164332_9	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-0164332_9	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0164332_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0164332_9	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0164332_9	COG	COG2369	NA	NA
UHGV-0164332_9	Structural annotation	PF06152, PF15542	NA	NA
UHGV-0164332_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0164332_10	UniRef90	UniRef90_A0A174ZTD4	Phage portal protein, putative, A118 family	NA
UHGV-0164332_10	eggNOG-mapper	997296.PB1_16244	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164332_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164332_10	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0164332_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0164332_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164332_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0164332_11	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0164332_11	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0164332_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0164332_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164332_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164332_11	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164332_12	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0164332_12	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0164332_12	Structural annotation	PF07141	NA	NA
UHGV-0164332_13	KOfam	K05785	rfaH; transcriptional antiterminator RfaH	NA
UHGV-0164332_13	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0164332_13	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-0164332_13	eggNOG-mapper	1410674.JNKU01000045_gene1383	Participates in transcription elongation, termination and antitermination	NA
UHGV-0164332_13	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0164332_13	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0164332_13	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0164332_14	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0164332_14	UniRef90	UniRef90_J5WG17	PF11985 family protein	NA
UHGV-0164332_14	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0164332_14	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0164332_14	Structural annotation	PF11985	NA	NA
UHGV-0164332_15	PHROG	phrog_25462	NA	unknown function
UHGV-0164332_15	UniRef90	UniRef90_A0A3C0QMV8	Type VI secretion protein	NA
UHGV-0164332_15	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0164332_15	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0164332_16	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0164332_17	eggNOG-mapper	411473.RUMCAL_01916	Mor transcription activator	NA
UHGV-0164332_17	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0164332_17	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0164332_18	PHROG	phrog_286	NA	unknown function
UHGV-0164332_18	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0164332_18	eggNOG-mapper	411473.RUMCAL_01915	NA	NA
UHGV-0164332_18	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0164332_18	Structural annotation	PF06252	NA	NA
UHGV-0164332_19	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0164332_19	AcrCatalog	cluster_71843	NA	NA
UHGV-0164332_20	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0164332_20	UniRef90	UniRef90_A0A017RV38	SpoVT-AbrB domain-containing protein	NA
UHGV-0164332_20	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-0164332_20	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0164332_20	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0164332_23	PHROG	phrog_4292	NA	unknown function
UHGV-0164332_23	eggNOG-mapper	645991.Sgly_0752	NA	NA
UHGV-0164332_24	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0164332_24	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0164332_24	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-0164332_24	eggNOG-mapper	411473.RUMCAL_01909	AAA domain	NA
UHGV-0164332_24	Pfam	PF13401	AAA domain	AAA_22
UHGV-0164332_24	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0164332_24	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0164332_25	PHROG	phrog_310	transposase	integration and excision
UHGV-0164332_25	UniRef90	UniRef90_A0A174ZTH8	Integrase core domain	NA
UHGV-0164332_25	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0164332_25	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0164332_25	Pfam	PF00665	Integrase core domain	rve
UHGV-0164332_25	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0164332_25	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0164332_25	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0164332_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0164332_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164332_29	UniRef90	UniRef90_A0A174ZWN9	Transcriptional regulator, y4mF family	NA
UHGV-0164332_29	eggNOG-mapper	1235792.C808_01473	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164332_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164332_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0164332_29	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0164332_30	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0164332_30	UniRef90	UniRef90_B0P6Y9	BRO family, N-terminal domain protein	NA
UHGV-0164332_30	eggNOG-mapper	445972.ANACOL_00517	BRO family, N-terminal domain	NA
UHGV-0164332_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164332_30	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0164332_30	COG	COG3617	Prophage antirepressor	NA