UHGV-0164351

Genome information

Genome length 43,790 bps

CDS count 65

Completeness 95.92% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164351
vOTU ID	vOTU-068513
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_558735
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.9
Jumbo phage	No

Genome content
Genome length	43,790 bps
GC content	50.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.23%
Average CDS length	625.34 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164351_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164351_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0164351_1	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0164351_1	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0164351_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164351_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0164351_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0164351_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164351_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0164351_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164351_2	UniRef90	UniRef90_UPI00189B6D19	helix-turn-helix domain-containing protein	NA
UHGV-0164351_2	eggNOG-mapper	97139.C824_05389	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164351_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0164351_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0164351_2	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0164351_5	UniRef90	UniRef90_UPI0018982E6D	Holliday junction resolvase RecU	NA
UHGV-0164351_5	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0164351_5	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0164351_6	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0164351_6	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0164351_6	UniRef90	UniRef90_UPI00164EB154	DEAD/DEAH box helicase family protein	NA
UHGV-0164351_6	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0164351_6	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0164351_6	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0164351_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0164351_6	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0164351_6	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0164351_7	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0164351_7	UniRef90	UniRef90_UPI00189DB5D1	DNA polymerase elongation subunit (family B)	NA
UHGV-0164351_7	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0164351_7	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0164351_7	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0164351_8	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164351_8	UniRef90	UniRef90_UPI00164E6A42	ERF family protein	NA
UHGV-0164351_8	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0164351_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0164351_8	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0164351_8	Structural annotation	PF04404	NA	NA
UHGV-0164351_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164351_9	UniRef90	UniRef90_UPI00164ECEF5	YqaJ viral recombinase family protein	NA
UHGV-0164351_9	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0164351_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0164351_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0164351_9	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0164351_11	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0164351_12	PHROG	phrog_1485	NA	unknown function
UHGV-0164351_12	UniRef90	UniRef90_UPI00164CE11C	nucleotide modification associated domain-containing protein	NA
UHGV-0164351_12	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0164351_12	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0164351_13	Structural annotation	PF08410, COG5515	NA	NA
UHGV-0164351_14	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0164351_14	UniRef90	UniRef90_UPI001899D94E	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0164351_14	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0164351_14	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0164351_14	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0164351_14	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0164351_15	PHROG	phrog_3154	NA	unknown function
UHGV-0164351_16	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0164351_16	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0164351_16	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-0164351_16	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0164351_16	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0164351_16	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0164351_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0164351_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0164351_17	UniRef90	UniRef90_UPI001C108757	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0164351_17	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0164351_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0164351_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0164351_17	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-0164351_18	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0164351_18	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0164351_18	UniRef90	UniRef90_UPI001A9AFBB0	FAD-dependent thymidylate synthase	NA
UHGV-0164351_18	eggNOG-mapper	1235797.C816_01399	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0164351_18	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0164351_18	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0164351_18	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0164351_18	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0164351_21	PHROG	phrog_30550	NA	unknown function
UHGV-0164351_21	UniRef90	UniRef90_A0A316PXP5	Hydrolase_2 domain-containing protein	NA
UHGV-0164351_21	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0164351_21	Structural annotation	TIGR02869	NA	NA
UHGV-0164351_22	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0164351_22	UniRef90	UniRef90_UPI00164DE9BA	primase C-terminal domain-containing protein	NA
UHGV-0164351_22	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0164351_22	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0164351_22	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0164351_22	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0164351_25	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0164351_25	UniRef90	UniRef90_UPI00164E4416	phage/plasmid primase, P4 family	NA
UHGV-0164351_25	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0164351_25	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0164351_25	Pfam	PF19263	NA	DUF5906
UHGV-0164351_25	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0164351_25	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0164351_25	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0164351_25	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0164351_28	PHROG	phrog_22389	NA	unknown function
UHGV-0164351_28	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0164351_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0164351_30	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0164351_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164351_30	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0164351_30	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0164351_30	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0164351_31	PHROG	phrog_924	NA	unknown function
UHGV-0164351_31	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0164351_31	eggNOG-mapper	1316932.MHH_c17560	NA	NA
UHGV-0164351_31	Pfam	PF04448	NA	DUF551
UHGV-0164351_32	UniRef90	UniRef90_A0A1G1KII7	HTH cro/C1-type domain-containing protein	NA
UHGV-0164351_32	eggNOG-mapper	1123263.AUKY01000012_gene1991	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0164351_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164351_32	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0164351_32	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0164351_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0164351_34	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0164351_34	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-0164351_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0164351_34	Structural annotation	PF16677	NA	NA
UHGV-0164351_38	UniRef90	UniRef90_UPI001C02D1DF	winged helix-turn-helix transcriptional regulator	NA
UHGV-0164351_38	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0164351_38	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0164351_39	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0164351_39	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0164351_39	UniRef90	UniRef90_H1CEQ0	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0164351_39	eggNOG-mapper	1345695.CLSA_c29990	Resolvase, N terminal domain	NA
UHGV-0164351_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164351_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164351_39	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0164351_40	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0164351_40	UniRef90	UniRef90_UPI001CBCA766	OB-fold putative lipoprotein	NA
UHGV-0164351_40	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0164351_40	Structural annotation	PF12869, MF_01959, NF009635, COG0361	NA	NA
UHGV-0164351_41	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0164351_41	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0164351_41	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0164351_41	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0164351_41	COG	COG5410	NA	NA
UHGV-0164351_41	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0164351_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164351_42	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0164351_42	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164351_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164351_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0164351_44	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0164351_45	PHROG	phrog_247	major head protein	head and packaging
UHGV-0164351_45	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0164351_45	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0164351_45	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0164351_47	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0164351_47	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0164351_47	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0164351_47	Structural annotation	TIGR01560	NA	NA
UHGV-0164351_48	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0164351_49	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0164351_50	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0164351_51	PHROG	phrog_158	major tail protein	tail
UHGV-0164351_51	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0164351_51	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0164351_51	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0164351_51	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0164351_52	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0164351_52	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0164351_52	Pfam	PF16478	NA	DUF5055
UHGV-0164351_52	Structural annotation	PF16478	NA	NA
UHGV-0164351_53	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0164351_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0164351_54	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0164351_54	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0164351_54	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0164351_55	PHROG	phrog_1194	NA	unknown function
UHGV-0164351_55	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0164351_55	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0164351_55	Pfam	PF20458	NA	DUF6711
UHGV-0164351_55	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0164351_56	PHROG	phrog_6616	tail protein	tail
UHGV-0164351_56	UniRef90	UniRef90_UPI0008BC4959	gp58-like family protein	NA
UHGV-0164351_56	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0164351_56	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0164351_57	PHROG	phrog_372	tail protein	tail
UHGV-0164351_57	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0164351_57	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0164351_57	Pfam	PF05895	NA	DUF859
UHGV-0164351_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0164351_57	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG5608	NA	NA
UHGV-0164351_58	Structural annotation	PF20622, NF033814	NA	NA
UHGV-0164351_59	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0164351_59	Structural annotation	PF13306	NA	NA
UHGV-0164351_61	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0164351_61	PHROG	phrog_18593	NA	unknown function
UHGV-0164351_61	UniRef90	UniRef90_A0A1C5VT90	Chitinase A1	NA
UHGV-0164351_61	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0164351_61	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0164351_61	Structural annotation	PF14600	NA	NA
UHGV-0164351_62	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0164351_62	PHROG	phrog_1794	amidase	lysis
UHGV-0164351_62	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0164351_62	eggNOG-mapper	1235793.C809_04312	Ami_2	NA
UHGV-0164351_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0164351_62	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0164351_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0164351_62	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0164351_63	PHROG	phrog_4105	NA	unknown function
UHGV-0164351_63	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0164351_64	PHROG	phrog_1129	holin	lysis
UHGV-0164351_64	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0164351_64	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0164351_64	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0164351_64	Structural annotation	PF06946	NA	NA