UHGV-0164368

Genome information

Genome length 30,907 bps

CDS count 42

Completeness 68.10% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164368
vOTU ID	vOTU-028184
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_526079
BioSample	SAMN06164436
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.54
Jumbo phage	No

Genome content
Genome length	30,907 bps
GC content	50.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.88%
Average CDS length	686.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164368_1	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0164368_1	UniRef90	UniRef90_R6NFT7	Phage/plasmid primase P4 family C-terminal domain	NA
UHGV-0164368_1	eggNOG-mapper	1121866.AUGK01000003_gene1422	Phage plasmid primase, P4 family	NA
UHGV-0164368_1	Pfam	PF19263	NA	DUF5906
UHGV-0164368_1	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0164368_1	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0164368_1	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0164368_4	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0164368_4	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0164368_4	UniRef90	UniRef90_A0A3D2X8T0	RNA-splicing ligase RtcB	NA
UHGV-0164368_4	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0164368_4	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0164368_4	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0164368_4	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0164368_6	eggNOG-mapper	1415774.U728_1676	DNA-packaging protein gp3	NA
UHGV-0164368_7	PHROG	phrog_4264	NA	unknown function
UHGV-0164368_7	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-0164368_11	PHROG	phrog_6244	NA	unknown function
UHGV-0164368_11	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0164368_13	UniRef90	UniRef90_R9JFJ9	HTH cro/C1-type domain-containing protein	NA
UHGV-0164368_13	eggNOG-mapper	1235800.C819_01469	NA	NA
UHGV-0164368_13	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0164368_14	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0164368_14	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0164368_14	UniRef90	UniRef90_R6N9Q2	Resolvase	NA
UHGV-0164368_14	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-0164368_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164368_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164368_14	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0164368_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0164368_16	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0164368_16	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0164368_16	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0164368_16	COG	COG5410	NA	NA
UHGV-0164368_16	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0164368_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164368_17	UniRef90	UniRef90_R6P563	SPP1 family phage portal protein	NA
UHGV-0164368_17	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164368_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164368_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0164368_18	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164368_18	UniRef90	UniRef90_UPI001048CC1B	NUMOD4 domain-containing protein	NA
UHGV-0164368_18	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0164368_18	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0164368_18	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0164368_18	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0164368_18	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0164368_19	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0164368_19	Structural annotation	PF06810	NA	NA
UHGV-0164368_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0164368_20	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0164368_20	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0164368_21	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0164368_21	UniRef90	UniRef90_A0A7S8CBU7	Termination factor Rho	NA
UHGV-0164368_21	eggNOG-mapper	1033743.CAES01000104_gene3498	NA	NA
UHGV-0164368_22	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0164368_22	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0164368_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0164368_22	Structural annotation	TIGR01560	NA	NA
UHGV-0164368_23	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0164368_24	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0164368_24	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0164368_25	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-0164368_25	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0164368_26	PHROG	phrog_158	major tail protein	tail
UHGV-0164368_26	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0164368_26	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0164368_26	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0164368_26	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0164368_27	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0164368_27	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0164368_27	Pfam	PF16478	NA	DUF5055
UHGV-0164368_27	Structural annotation	PF16478	NA	NA
UHGV-0164368_28	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0164368_29	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0164368_29	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0164368_29	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0164368_30	PHROG	phrog_1194	NA	unknown function
UHGV-0164368_30	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0164368_30	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0164368_31	PHROG	phrog_13879	NA	unknown function
UHGV-0164368_31	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0164368_31	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0164368_32	PHROG	phrog_18725	NA	unknown function
UHGV-0164368_32	eggNOG-mapper	1235800.C819_00473	NA	NA
UHGV-0164368_33	PHROG	phrog_1220	head protein	head and packaging
UHGV-0164368_34	PHROG	phrog_5302	tail protein	tail
UHGV-0164368_34	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0164368_34	eggNOG-mapper	1121439.dsat_1918	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0164368_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0164368_34	Structural annotation	PF07210, PF13620, PF16893, NF040788, COG2512	NA	NA
UHGV-0164368_36	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0164368_36	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0164368_36	UniRef90	UniRef90_A0A849CV99	RNA-directed DNA polymerase	NA
UHGV-0164368_36	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0164368_36	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0164368_36	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0164368_36	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0164368_38	PHROG	phrog_18593	NA	unknown function
UHGV-0164368_38	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0164368_38	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0164368_38	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0164368_38	Structural annotation	PF14600	NA	NA
UHGV-0164368_39	PHROG	phrog_37604	NA	unknown function
UHGV-0164368_39	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0164368_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0164368_40	PHROG	phrog_1794	amidase	lysis
UHGV-0164368_40	UniRef90	UniRef90_A0A849CVD3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0164368_40	eggNOG-mapper	908340.HMPREF9406_0181	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0164368_40	AcrCatalog	cluster_53013	NA	NA
UHGV-0164368_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0164368_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0164368_40	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0164368_41	PHROG	phrog_17876	NA	unknown function
UHGV-0164368_41	eggNOG-mapper	411483.FAEPRAA2165_01926	NA	NA
UHGV-0164368_42	PHROG	phrog_6918	holin	lysis
UHGV-0164368_42	UniRef90	UniRef90_A0A849CVA3	Holin	NA
UHGV-0164368_42	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0164368_42	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0164368_42	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0164368_42	Structural annotation	PF09682, TIGR01673	NA	NA