UHGV-0164393

Genome information

Genome length 43,175 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164393
vOTU ID	vOTU-062409
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_523144
BioSample	SAMN06164422
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.42
Jumbo phage	No

Genome content
Genome length	43,175 bps
GC content	52.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.78%
Average CDS length	598.41 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164393_1	KOfam	K21064	ycsE, yitU, ywtE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]	NA
UHGV-0164393_1	PHROG	phrog_4901	hydrolase	other
UHGV-0164393_1	UniRef90	UniRef90_R5ES30	HAD hydrolase family IIB	NA
UHGV-0164393_1	eggNOG-mapper	1378168.N510_00511	hydrolase	NA
UHGV-0164393_1	Pfam	PF08282	haloacid dehalogenase-like hydrolase	Hydrolase_3
UHGV-0164393_1	NCBIFam	TIGR01484.1	HAD-IIB family hydrolase	NA
UHGV-0164393_1	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0164393_1	Structural annotation	PF08282, MF_01847, TIGR00099, COG0561	NA	NA
UHGV-0164393_2	PHROG	phrog_443	holin	lysis
UHGV-0164393_2	UniRef90	UniRef90_R5EDV9	Conserved domain protein	NA
UHGV-0164393_2	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0164393_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0164393_2	Structural annotation	PF16945	NA	NA
UHGV-0164393_3	PHROG	phrog_937	hemolysin	other
UHGV-0164393_3	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0164393_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0164393_4	PHROG	phrog_894	endolysin	lysis
UHGV-0164393_4	UniRef90	UniRef90_R5EEL2	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0164393_4	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0164393_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0164393_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0164393_4	COG	COG3108	NA	NA
UHGV-0164393_4	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0164393_5	PHROG	phrog_1382	NA	unknown function
UHGV-0164393_5	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0164393_7	eggNOG-mapper	1151292.QEW_0665	NA	NA
UHGV-0164393_7	Structural annotation	PF10651, TIGR04339	NA	NA
UHGV-0164393_10	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-0164393_11	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0164393_11	eggNOG-mapper	31754.Q38319_9CAUD	peptidoglycan catabolic process	NA
UHGV-0164393_14	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0164393_14	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0164393_15	PHROG	phrog_6616	tail protein	tail
UHGV-0164393_15	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0164393_15	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-0164393_16	PHROG	phrog_1194	NA	unknown function
UHGV-0164393_16	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0164393_16	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0164393_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0164393_17	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0164393_17	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0164393_17	COG	COG1511	NA	NA
UHGV-0164393_17	Structural annotation	PF16789, TIGR02473, COG2882	NA	NA
UHGV-0164393_18	PHROG	phrog_706	NA	unknown function
UHGV-0164393_18	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0164393_18	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0164393_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0164393_18	Structural annotation	PF06854	NA	NA
UHGV-0164393_19	PHROG	phrog_11299	NA	unknown function
UHGV-0164393_19	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0164393_19	Structural annotation	PF10666	NA	NA
UHGV-0164393_20	PHROG	phrog_3099	NA	unknown function
UHGV-0164393_20	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0164393_20	Structural annotation	TIGR02126	NA	NA
UHGV-0164393_21	PHROG	phrog_3266	tail completion	connector
UHGV-0164393_21	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0164393_21	Structural annotation	PF08873	NA	NA
UHGV-0164393_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0164393_22	UniRef90	UniRef90_UPI0006805998	minor capsid protein	NA
UHGV-0164393_22	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0164393_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0164393_22	Structural annotation	PF11114	NA	NA
UHGV-0164393_23	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0164393_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0164393_24	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0164393_25	PHROG	phrog_212	major head protein	head and packaging
UHGV-0164393_25	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0164393_25	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0164393_25	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0164393_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0164393_26	UniRef90	UniRef90_A0A8J6J919	Phage scaffolding protein	NA
UHGV-0164393_26	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0164393_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0164393_26	Structural annotation	PF06810	NA	NA
UHGV-0164393_28	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0164393_28	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0164393_28	Structural annotation	PF20111	NA	NA
UHGV-0164393_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0164393_29	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0164393_29	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0164393_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0164393_29	COG	COG2369	NA	NA
UHGV-0164393_29	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0164393_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0164393_30	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0164393_30	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0164393_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164393_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0164393_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164393_32	PHROG	phrog_10250	NA	unknown function
UHGV-0164393_32	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0164393_32	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0164393_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0164393_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164393_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164393_32	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164393_33	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0164393_33	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0164393_33	Structural annotation	PF13542	NA	NA
UHGV-0164393_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164393_34	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0164393_34	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-0164393_34	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0164393_36	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0164393_38	PHROG	phrog_924	NA	unknown function
UHGV-0164393_38	UniRef90	UniRef90_A0A2E3KS66	NA	NA
UHGV-0164393_38	Pfam	PF04448	NA	DUF551
UHGV-0164393_38	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0164393_41	PHROG	phrog_3136	NA	unknown function
UHGV-0164393_41	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0164393_41	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0164393_41	Pfam	PF04266	ASCH domain	ASCH
UHGV-0164393_41	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0164393_41	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0164393_42	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0164393_42	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0164393_42	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164393_42	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0164393_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0164393_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0164393_43	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0164393_43	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0164393_43	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0164393_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0164393_43	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0164393_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0164393_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0164393_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0164393_45	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0164393_45	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0164393_45	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0164393_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0164393_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0164393_45	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0164393_47	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0164393_47	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0164393_47	UniRef90	UniRef90_A0A4Z0Y679	DNA replication protein DnaC	NA
UHGV-0164393_47	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0164393_47	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0164393_47	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0164393_47	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0164393_48	PHROG	phrog_15768	NA	unknown function
UHGV-0164393_48	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0164393_48	Pfam	PF19808	NA	DUF6291
UHGV-0164393_48	Structural annotation	PF19808	NA	NA
UHGV-0164393_49	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0164393_49	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164393_49	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0164393_49	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0164393_49	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0164393_49	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0164393_49	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0164393_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164393_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164393_50	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0164393_50	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0164393_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164393_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0164393_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164393_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0164393_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0164393_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0164393_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164393_51	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0164393_51	eggNOG-mapper	40521.Q9T172_BPA18	DNA metabolic process	NA
UHGV-0164393_51	Pfam	PF03837	RecT family	RecT
UHGV-0164393_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0164393_51	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0164393_52	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164393_52	eggNOG-mapper	397290.C810_01484	NA	NA
UHGV-0164393_53	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164393_53	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0164393_53	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0164393_53	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0164393_53	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0164393_53	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0164393_53	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0164393_57	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0164393_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164393_59	UniRef90	UniRef90_A0A8D9UHB1	Repressor protein CI	NA
UHGV-0164393_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164393_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164393_59	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0164393_62	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0164393_63	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164393_63	PHROG	phrog_95	integrase	integration and excision
UHGV-0164393_63	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0164393_63	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-0164393_63	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164393_63	Pfam	PF07508	Recombinase	Recombinase
UHGV-0164393_63	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0164393_63	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164393_63	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0164393_64	UniRef90	UniRef90_UPI00195F540C	DNA repair protein	NA
UHGV-0164393_64	eggNOG-mapper	1123304.AQYA01000032_gene876	NA	NA
UHGV-0164393_65	KOfam	K03100	lepB; signal peptidase I [EC:3.4.21.89]	NA
UHGV-0164393_65	UniRef90	UniRef90_R5EE42	Signal peptidase I	NA
UHGV-0164393_65	eggNOG-mapper	1235798.C817_01178	Signal peptidase, peptidase S26	NA
UHGV-0164393_65	Pfam	PF10502	Signal peptidase, peptidase S26	Peptidase_S26
UHGV-0164393_65	NCBIFam	TIGR02227.1	signal peptidase I	NA
UHGV-0164393_65	COG	COG0681	Signal peptidase I	NA
UHGV-0164393_66	UniRef90	UniRef90_UPI001C0F83CA	starch-binding protein	NA
UHGV-0164393_66	eggNOG-mapper	1410670.JHXF01000012_gene2099	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins	NA
UHGV-0164393_66	COG	COG0810	Periplasmic protein TonB, links inner and outer membranes	NA