UHGV-0164402

Genome information

Genome length 34,355 bps

CDS count 45

Completeness 75.72% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164402
vOTU ID	vOTU-028186
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_542884
BioSample	SAMN06328460
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.78
Jumbo phage	No

Genome content
Genome length	34,355 bps
GC content	45.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.98%
Average CDS length	697.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164402_2	PHROG	phrog_25468	NA	unknown function
UHGV-0164402_2	UniRef90	UniRef90_R6SRS7	Hep/Hag repeat protein	NA
UHGV-0164402_2	eggNOG-mapper	397290.C810_01268	NA	NA
UHGV-0164402_2	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0164402_3	PHROG	phrog_1194	NA	unknown function
UHGV-0164402_3	eggNOG-mapper	1499683.CCFF01000017_gene2921	NA	NA
UHGV-0164402_3	Pfam	PF20458	NA	DUF6711
UHGV-0164402_4	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0164402_4	eggNOG-mapper	1215915.BN193_09055	phage tail tape measure protein	NA
UHGV-0164402_4	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0164402_5	UniRef90	UniRef90_UPI0016860472	NA	NA
UHGV-0164402_5	eggNOG-mapper	1121947.AUHK01000002_gene942	NA	NA
UHGV-0164402_5	Pfam	PF19591	NA	DUF6096
UHGV-0164402_5	Structural annotation	PF19591	NA	NA
UHGV-0164402_7	PHROG	phrog_158	major tail protein	tail
UHGV-0164402_7	UniRef90	UniRef90_A0A174ZXR0	Phage tail protein	NA
UHGV-0164402_7	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0164402_7	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0164402_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0164402_8	Pfam	PF11367	NA	DUF3168
UHGV-0164402_8	Structural annotation	PF05657	NA	NA
UHGV-0164402_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164402_9	UniRef90	UniRef90_A0A174ZQK8	Mu-like prophage protein gpG	NA
UHGV-0164402_9	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0164402_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0164402_9	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0164402_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0164402_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0164402_11	UniRef90	UniRef90_A0A175A0L9	Phage gp6-like head-tail connector protein	NA
UHGV-0164402_11	eggNOG-mapper	764562.D7RWJ1_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0164402_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0164402_11	Structural annotation	TIGR01560	NA	NA
UHGV-0164402_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-0164402_12	UniRef90	UniRef90_A0A8J6JGV9	Phage capsid protein	NA
UHGV-0164402_12	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0164402_12	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0164402_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0164402_13	UniRef90	UniRef90_A0A371P084	NA	NA
UHGV-0164402_13	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0164402_13	Pfam	PF14265	NA	DUF4355
UHGV-0164402_13	Structural annotation	PF14265	NA	NA
UHGV-0164402_15	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0164402_15	UniRef90	UniRef90_B0MPW0	Phage protein F-like protein	NA
UHGV-0164402_15	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0164402_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0164402_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0164402_15	COG	COG2369	NA	NA
UHGV-0164402_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0164402_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164402_16	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-0164402_16	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0164402_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164402_16	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0164402_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0164402_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164402_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0164402_17	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-0164402_17	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0164402_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164402_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0164402_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164402_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164402_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164402_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0164402_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0164402_18	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-0164402_18	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0164402_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0164402_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0164402_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0164402_19	PHROG	phrog_3634	NA	unknown function
UHGV-0164402_19	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0164402_19	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0164402_19	Structural annotation	PF10137, MF_03036, TIGR03646, COG4271	NA	NA
UHGV-0164402_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164402_20	UniRef90	UniRef90_A0A174ZYK6	Phage transcriptional regulator, RinA family	NA
UHGV-0164402_20	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0164402_20	Structural annotation	PF07374	NA	NA
UHGV-0164402_22	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0164402_22	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0164402_22	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-0164402_22	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-0164402_22	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0164402_22	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0164402_22	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0164402_22	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0164402_23	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164402_23	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-0164402_23	eggNOG-mapper	1392487.JIAD01000001_gene538	VRR_NUC	NA
UHGV-0164402_23	Structural annotation	PF08774, NF002582	NA	NA
UHGV-0164402_24	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0164402_24	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-0164402_24	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0164402_24	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0164402_24	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0164402_24	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0164402_25	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0164402_25	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0164402_25	UniRef90	UniRef90_A0A329UVL7	POLAc domain-containing protein	NA
UHGV-0164402_25	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0164402_25	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0164402_25	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0164402_25	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0164402_26	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164402_26	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-0164402_26	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-0164402_26	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0164402_26	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0164402_28	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164402_28	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-0164402_28	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-0164402_28	Pfam	PF10926	NA	DUF2800
UHGV-0164402_28	COG	COG2887	RecB family exonuclease	NA
UHGV-0164402_28	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0164402_30	PHROG	phrog_18562	NA	unknown function
UHGV-0164402_30	eggNOG-mapper	679201.HMPREF9334_00305	NA	NA
UHGV-0164402_32	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0164402_32	PHROG	phrog_11371	NA	unknown function
UHGV-0164402_32	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-0164402_32	eggNOG-mapper	742738.HMPREF9460_01134	Type II restriction enzyme, methylase subunits	NA
UHGV-0164402_32	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0164402_32	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0164402_32	Structural annotation	PF20473, NF000058, COG0742	NA	NA
UHGV-0164402_33	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0164402_35	UniRef90	UniRef90_D4JVL4	DNA binding domain, excisionase family	NA
UHGV-0164402_35	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0164402_35	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0164402_35	COG	COG1762	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA
UHGV-0164402_36	PHROG	phrog_585	NA	unknown function
UHGV-0164402_36	UniRef90	UniRef90_UPI000CF44126	NA	NA
UHGV-0164402_36	eggNOG-mapper	482234.SCAZ3_03560	NA	NA
UHGV-0164402_36	Pfam	PF10711	NA	DUF2513
UHGV-0164402_36	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0164402_38	UniRef90	UniRef90_A0A0M6WGZ2	HTH_7 domain-containing protein	NA
UHGV-0164402_38	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0164402_38	Pfam	PF21716	Probable addiction module antidote protein	dnstrm_HI1420
UHGV-0164402_38	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0164402_39	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0164402_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0164402_39	UniRef90	UniRef90_A0A373V4F8	Helix-turn-helix domain-containing protein	NA
UHGV-0164402_39	eggNOG-mapper	697329.Rumal_3450	NA	NA
UHGV-0164402_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0164402_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164402_39	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0164402_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0164402_39	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0164402_42	KOfam	K14059	int; integrase	NA
UHGV-0164402_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0164402_42	UniRef90	UniRef90_A0A174ZR64	Tyrosine recombinase XerD	NA
UHGV-0164402_42	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0164402_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164402_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0164402_42	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0164402_43	eggNOG-mapper	697329.Rumal_2724	NA	NA