UHGV-0164435

Genome information

Genome length 27,182 bps

CDS count 33

Completeness 61.06% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164435
vOTU ID	vOTU-028187
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_540187
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.38
Jumbo phage	No

Genome content
Genome length	27,182 bps
GC content	38.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.94%
Average CDS length	766.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164435_4	PHROG	phrog_18444	NA	unknown function
UHGV-0164435_5	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0164435_5	PHROG	phrog_6616	tail protein	tail
UHGV-0164435_5	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0164435_5	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0164435_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0164435_5	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0164435_6	PHROG	phrog_1194	NA	unknown function
UHGV-0164435_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0164435_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0164435_7	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0164435_7	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0164435_7	COG	COG5412	Phage-related protein	NA
UHGV-0164435_7	Structural annotation	PF11172	NA	NA
UHGV-0164435_8	PHROG	phrog_706	NA	unknown function
UHGV-0164435_8	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0164435_8	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0164435_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0164435_8	Structural annotation	PF06854	NA	NA
UHGV-0164435_9	PHROG	phrog_11299	NA	unknown function
UHGV-0164435_9	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0164435_9	Structural annotation	PF10666	NA	NA
UHGV-0164435_10	PHROG	phrog_3099	NA	unknown function
UHGV-0164435_10	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0164435_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0164435_11	PHROG	phrog_3266	tail completion	connector
UHGV-0164435_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0164435_11	Structural annotation	PF12691	NA	NA
UHGV-0164435_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0164435_12	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0164435_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0164435_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0164435_12	Structural annotation	PF11114	NA	NA
UHGV-0164435_13	PHROG	phrog_3366	NA	unknown function
UHGV-0164435_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0164435_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0164435_14	PHROG	phrog_1233	NA	unknown function
UHGV-0164435_14	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0164435_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0164435_15	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0164435_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0164435_16	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0164435_16	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0164435_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0164435_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0164435_17	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0164435_17	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0164435_18	PHROG	phrog_419	NA	unknown function
UHGV-0164435_18	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0164435_18	Structural annotation	PF14083	NA	NA
UHGV-0164435_19	PHROG	phrog_1048	NA	unknown function
UHGV-0164435_19	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0164435_20	PHROG	phrog_918	NA	unknown function
UHGV-0164435_20	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0164435_20	eggNOG-mapper	1225795.K4I1W7_9CAUD	NA	NA
UHGV-0164435_20	Pfam	PF19791	NA	DUF6275
UHGV-0164435_20	Structural annotation	PF19791	NA	NA
UHGV-0164435_21	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0164435_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0164435_22	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0164435_22	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0164435_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0164435_22	COG	COG2369	NA	NA
UHGV-0164435_22	Structural annotation	PF06152	NA	NA
UHGV-0164435_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0164435_23	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0164435_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0164435_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0164435_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164435_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0164435_25	UniRef90	UniRef90_UPI00156DBE69	PBSX family phage terminase large subunit	NA
UHGV-0164435_25	eggNOG-mapper	1209989.TepiRe1_1144	Terminase RNAseH like domain	NA
UHGV-0164435_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164435_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0164435_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164435_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164435_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164435_26	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0164435_26	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0164435_26	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0164435_26	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0164435_26	Structural annotation	PF16677	NA	NA
UHGV-0164435_28	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0164435_30	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-0164435_30	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0164435_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0164435_30	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0164435_32	PHROG	phrog_15863	NA	unknown function
UHGV-0164435_32	UniRef90	UniRef90_A0A417UWU3	J domain-containing protein	NA
UHGV-0164435_32	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0164435_32	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0164435_33	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA