UHGV-0164440

Genome information

Genome length 36,115 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164440
vOTU ID	vOTU-046346
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_556434
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.05
Jumbo phage	No

Genome content
Genome length	36,115 bps
GC content	50.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.26%
Average CDS length	569.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164440_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0164440_5	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0164440_7	PHROG	phrog_21613	NA	unknown function
UHGV-0164440_7	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0164440_8	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164440_8	UniRef90	UniRef90_A0A3C0NN37	NA	NA
UHGV-0164440_8	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0164440_8	Pfam	PF12684	NA	DUF3799
UHGV-0164440_8	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0164440_8	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0164440_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164440_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164440_10	UniRef90	UniRef90_A0A3D0X741	Single-stranded DNA-binding protein	NA
UHGV-0164440_10	eggNOG-mapper	428125.CLOLEP_03546	Single-stranded DNA-binding protein	NA
UHGV-0164440_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164440_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0164440_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164440_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0164440_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0164440_11	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0164440_11	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-0164440_11	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0164440_11	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0164440_11	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0164440_14	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0164440_14	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0164440_14	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0164440_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0164440_14	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0164440_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164440_15	UniRef90	UniRef90_A0A7S5R1H6	HNH endonuclease protein	NA
UHGV-0164440_15	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0164440_20	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164440_20	UniRef90	UniRef90_A0A7U8IML0	ASCH domain-containing protein	NA
UHGV-0164440_20	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0164440_20	Pfam	PF12961	NA	DUF3850
UHGV-0164440_20	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0164440_21	PHROG	phrog_1374	NA	unknown function
UHGV-0164440_21	UniRef90	UniRef90_A0A4R2SLJ8	Transmembrane Fragile-X-F protein	NA
UHGV-0164440_21	eggNOG-mapper	1168478.I6R128_9CAUD	NA	NA
UHGV-0164440_22	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0164440_22	PHROG	phrog_11992	NA	unknown function
UHGV-0164440_22	UniRef90	UniRef90_UPI00083043CA	CHC2 zinc finger domain-containing protein	NA
UHGV-0164440_22	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0164440_22	PADLOC	drt-UG29	DRT	DRT
UHGV-0164440_22	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0164440_22	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0164440_22	Structural annotation	PF01807	NA	NA
UHGV-0164440_23	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0164440_23	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0164440_23	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0164440_23	Pfam	PF06048	NA	DUF927
UHGV-0164440_23	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0164440_23	COG	COG5519	NA	NA
UHGV-0164440_23	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0164440_24	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0164440_29	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164440_29	PHROG	phrog_95	integrase	integration and excision
UHGV-0164440_29	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0164440_29	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0164440_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164440_29	Pfam	PF07508	Recombinase	Recombinase
UHGV-0164440_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164440_29	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0164440_30	Pfam	PF13673	Acetyltransferase (GNAT) domain	Acetyltransf_10
UHGV-0164440_31	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0164440_31	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0164440_31	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0164440_31	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0164440_31	COG	COG5410	NA	NA
UHGV-0164440_31	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0164440_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164440_32	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0164440_32	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164440_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164440_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0164440_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-0164440_34	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0164440_34	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0164440_34	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0164440_35	UniRef90	UniRef90_D7GQN2	Phage QLRG family, putative DNA packaging	NA
UHGV-0164440_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0164440_35	Structural annotation	TIGR01560	NA	NA
UHGV-0164440_36	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0164440_37	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0164440_38	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0164440_39	PHROG	phrog_158	major tail protein	tail
UHGV-0164440_39	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0164440_39	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0164440_40	UniRef90	UniRef90_A0A843HLA7	NA	NA
UHGV-0164440_40	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0164440_40	Pfam	PF16478	NA	DUF5055
UHGV-0164440_40	Structural annotation	PF16478	NA	NA
UHGV-0164440_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0164440_42	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0164440_42	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0164440_43	PHROG	phrog_1194	NA	unknown function
UHGV-0164440_43	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0164440_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0164440_46	PHROG	phrog_1863	NA	unknown function
UHGV-0164440_46	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0164440_47	PHROG	phrog_1129	holin	lysis
UHGV-0164440_47	UniRef90	UniRef90_A0A316QDA6	Enolase	NA
UHGV-0164440_47	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0164440_47	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0164440_47	Structural annotation	PF06946	NA	NA
UHGV-0164440_48	UniRef90	UniRef90_A0A7X7WBI0	NlpC/P60 domain-containing protein	NA
UHGV-0164440_48	eggNOG-mapper	1121085.AUCI01000034_gene2009	Ami_2	NA
UHGV-0164440_48	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0164440_48	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0164440_48	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0164440_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0164440_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0164440_49	UniRef90	UniRef90_A0A6L6TNB8	Bro-N domain-containing protein	NA
UHGV-0164440_49	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0164440_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164440_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0164440_49	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0164440_50	UniRef90	UniRef90_A0A352I4Q2	CopG family transcriptional regulator	NA
UHGV-0164440_50	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-0164440_50	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0164440_53	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164440_53	UniRef90	UniRef90_A0A7C6W8G9	Metallophos domain-containing protein	NA
UHGV-0164440_53	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0164440_53	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0164440_53	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0164440_53	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0164440_54	PHROG	phrog_4897	kinase	other
UHGV-0164440_54	UniRef90	UniRef90_UPI0004802E43	NA	NA
UHGV-0164440_54	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0164440_54	Pfam	PF11753	NA	DUF3310
UHGV-0164440_55	KOfam	K14059	int; integrase	NA
UHGV-0164440_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0164440_55	UniRef90	UniRef90_A0A316QG14	Tyr recombinase domain-containing protein	NA
UHGV-0164440_55	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0164440_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164440_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0164440_55	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0164440_56	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0164440_56	eggNOG-mapper	411461.DORFOR_02407	Putative restriction endonuclease	NA
UHGV-0164440_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164440_56	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0164440_56	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0164440_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164440_57	UniRef90	UniRef90_UPI0009BF5E7A	helix-turn-helix domain-containing protein	NA
UHGV-0164440_57	eggNOG-mapper	1027396.LMOSA_21110	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0164440_57	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0164440_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164440_57	Structural annotation	PF01381, NF041951, COG3655	NA	NA