UHGV-0164447

Genome information

Genome length 26,466 bps

CDS count 34

Completeness 68.11% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164447
vOTU ID	vOTU-028188
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_556456
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.03
Jumbo phage	No

Genome content
Genome length	26,466 bps
GC content	47.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	95.84%
Average CDS length	753.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164447_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0164447_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0164447_1	UniRef90	UniRef90_R6MGK1	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	NA
UHGV-0164447_1	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0164447_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0164447_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0164447_1	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0164447_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164447_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0164447_2	UniRef90	UniRef90_A0A415Y8B5	Recombinase family protein	NA
UHGV-0164447_2	eggNOG-mapper	1160721.RBI_I01606	NA	NA
UHGV-0164447_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164447_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0164447_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0164447_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164447_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0164447_3	UniRef90	UniRef90_UPI0015708BEA	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0164447_4	PHROG	phrog_372	tail protein	tail
UHGV-0164447_4	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0164447_4	eggNOG-mapper	908340.HMPREF9406_0178	NA	NA
UHGV-0164447_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0164447_4	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0164447_5	PHROG	phrog_6616	tail protein	tail
UHGV-0164447_5	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0164447_5	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0164447_6	PHROG	phrog_1194	NA	unknown function
UHGV-0164447_6	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0164447_6	eggNOG-mapper	1151292.QEW_2422	NA	NA
UHGV-0164447_6	Pfam	PF20458	NA	DUF6711
UHGV-0164447_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0164447_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0164447_7	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0164447_7	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0164447_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0164447_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0164447_8	PHROG	phrog_8355	NA	unknown function
UHGV-0164447_8	UniRef90	UniRef90_UPI001F170E6A	Gp15 family bacteriophage protein	NA
UHGV-0164447_8	eggNOG-mapper	1117108.PAALTS15_13522	Bacteriophage Gp15 protein	NA
UHGV-0164447_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0164447_8	Structural annotation	PF06854	NA	NA
UHGV-0164447_9	PHROG	phrog_8300	NA	unknown function
UHGV-0164447_9	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-0164447_9	Structural annotation	PF06896	NA	NA
UHGV-0164447_10	PHROG	phrog_820	major tail protein	tail
UHGV-0164447_10	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0164447_10	COG	COG5492	NA	NA
UHGV-0164447_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0164447_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0164447_11	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0164447_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0164447_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0164447_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0164447_12	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0164447_13	PHROG	phrog_8710	NA	unknown function
UHGV-0164447_13	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0164447_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0164447_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0164447_14	eggNOG-mapper	1262449.CP6013_3201	NA	NA
UHGV-0164447_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0164447_15	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0164447_15	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0164447_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0164447_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0164447_16	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0164447_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0164447_18	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0164447_18	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0164447_18	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0164447_18	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164447_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0164447_18	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0164447_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0164447_20	UniRef90	UniRef90_A0A1C6JYS4	Phage minor capsid protein 2	NA
UHGV-0164447_20	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0164447_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0164447_20	COG	COG2369	NA	NA
UHGV-0164447_20	Structural annotation	PF06152	NA	NA
UHGV-0164447_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0164447_21	PHROG	phrog_291	endolysin	lysis
UHGV-0164447_21	UniRef90	UniRef90_A0A0K9N912	Putative endolysin	NA
UHGV-0164447_21	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0164447_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0164447_21	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0164447_21	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0164447_21	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0164447_22	PHROG	phrog_918	NA	unknown function
UHGV-0164447_22	UniRef90	UniRef90_UPI001E2DBFC8	NA	NA
UHGV-0164447_22	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0164447_22	Pfam	PF19791	NA	DUF6275
UHGV-0164447_22	Structural annotation	PF19791	NA	NA
UHGV-0164447_23	PHROG	phrog_199	holin	lysis
UHGV-0164447_23	UniRef90	UniRef90_A0A1Y3RUX6	Holin	NA
UHGV-0164447_23	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0164447_23	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0164447_23	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0164447_23	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0164447_23	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0164447_25	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0164447_25	eggNOG-mapper	1400520.LFAB_14150	Tyrosine phosphatase family	NA
UHGV-0164447_25	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0164447_25	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0164447_26	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0164447_26	PHROG	phrog_19695	NA	unknown function
UHGV-0164447_26	UniRef90	UniRef90_UPI000E5D2CA2	pyocin knob domain-containing protein	NA
UHGV-0164447_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0164447_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0164447_27	UniRef90	UniRef90_A0A355D4I5	Capsid protein	NA
UHGV-0164447_27	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0164447_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0164447_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164447_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0164447_28	UniRef90	UniRef90_A0A2S6HQI3	PBSX family phage terminase large subunit	NA
UHGV-0164447_28	eggNOG-mapper	585501.HMPREF6123_0843	Phage terminase, large subunit, PBSX family	NA
UHGV-0164447_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0164447_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164447_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0164447_29	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164447_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0164447_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0164447_30	UniRef90	UniRef90_A0A417HVX5	Terminase small subunit	NA
UHGV-0164447_30	eggNOG-mapper	1120978.KB894087_gene429	Terminase small subunit	NA
UHGV-0164447_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0164447_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0164447_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0164447_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164447_31	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0164447_31	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0164447_31	Structural annotation	PF07374	NA	NA
UHGV-0164447_32	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0164447_32	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0164447_32	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-0164447_32	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-0164447_32	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0164447_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0164447_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0164447_32	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0164447_33	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164447_33	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-0164447_33	eggNOG-mapper	1262449.CP6013_3186	VRR-NUC domain-containing protein	NA
UHGV-0164447_33	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA