UHGV-0164505

Genome information

Genome length 35,509 bps

CDS count 59

Completeness 97.86% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164505
vOTU ID	vOTU-062112
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_547650
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.35
Jumbo phage	No

Genome content
Genome length	35,509 bps
GC content	50.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.44%
Average CDS length	561.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164505_1	KOfam	K14059	int; integrase	NA
UHGV-0164505_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0164505_1	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0164505_1	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0164505_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0164505_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164505_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0164505_1	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0164505_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0164505_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0164505_3	UniRef90	UniRef90_A0A6N9NXR9	Helix-turn-helix domain-containing protein	NA
UHGV-0164505_3	eggNOG-mapper	634956.Geoth_0743	Peptidase S24-like	NA
UHGV-0164505_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164505_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0164505_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0164505_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0164505_4	UniRef90	UniRef90_A0A2N0ULV0	Helix-turn-helix domain protein	NA
UHGV-0164505_4	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164505_4	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0164505_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0164505_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0164505_5	UniRef90	UniRef90_A0A2A5IZS4	Phage antirepressor Ant	NA
UHGV-0164505_5	eggNOG-mapper	563192.HMPREF0179_02955	BRO family, N-terminal domain	NA
UHGV-0164505_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164505_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0164505_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0164505_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0164505_6	PHROG	phrog_6058	NA	unknown function
UHGV-0164505_6	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0164505_8	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0164505_8	PHROG	phrog_18750	NA	unknown function
UHGV-0164505_8	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0164505_8	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0164505_8	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0164505_8	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0164505_8	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0164505_11	PHROG	phrog_22040	NA	unknown function
UHGV-0164505_11	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0164505_15	PHROG	phrog_824	NA	unknown function
UHGV-0164505_15	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0164505_15	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0164505_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0164505_15	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0164505_17	PHROG	phrog_7445	NA	unknown function
UHGV-0164505_17	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0164505_17	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0164505_17	Structural annotation	PF14058	NA	NA
UHGV-0164505_18	PHROG	phrog_8470	NA	unknown function
UHGV-0164505_18	UniRef90	UniRef90_UPI00165E2CD5	PcfJ domain-containing protein	NA
UHGV-0164505_18	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0164505_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0164505_18	Structural annotation	PF14284	NA	NA
UHGV-0164505_19	PHROG	phrog_15609	NA	unknown function
UHGV-0164505_19	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-0164505_19	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0164505_19	Pfam	PF11300	NA	DUF3102
UHGV-0164505_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0164505_20	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0164505_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164505_20	eggNOG-mapper	537013.CLOSTMETH_02010	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164505_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164505_20	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0164505_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164505_23	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0164505_26	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0164505_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164505_27	PHROG	phrog_24518	NA	unknown function
UHGV-0164505_27	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0164505_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164505_28	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0164505_28	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0164505_29	Pfam	PF15499	Ubiquitin-specific peptidase-like, SUMO isopeptidase	Peptidase_C98
UHGV-0164505_30	Pfam	PF11781	Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7	zf-RRN7
UHGV-0164505_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164505_31	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0164505_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0164505_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164505_32	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0164505_32	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0164505_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0164505_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0164505_32	Structural annotation	PF05766	NA	NA
UHGV-0164505_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0164505_33	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0164505_33	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-0164505_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0164505_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0164505_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0164505_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0164505_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0164505_34	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0164505_34	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0164505_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0164505_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0164505_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0164505_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0164505_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0164505_35	UniRef90	UniRef90_UPI000C7BDACF	phage portal protein	NA
UHGV-0164505_35	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0164505_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0164505_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0164505_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0164505_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0164505_36	PHROG	phrog_16951	NA	unknown function
UHGV-0164505_36	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0164505_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0164505_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0164505_37	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0164505_37	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0164505_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0164505_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0164505_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0164505_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0164505_38	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0164505_38	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0164505_38	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0164505_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0164505_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0164505_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0164505_39	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0164505_39	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0164505_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0164505_40	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0164505_40	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0164505_40	Structural annotation	TIGR01725	NA	NA
UHGV-0164505_41	PHROG	phrog_78	tail terminator	connector
UHGV-0164505_41	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0164505_41	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0164505_42	PHROG	phrog_88	major tail protein	tail
UHGV-0164505_42	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0164505_42	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0164505_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0164505_44	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0164505_44	eggNOG-mapper	1089553.Tph_c23060	lysine exporter protein (LysE YggA)	NA
UHGV-0164505_44	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0164505_44	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0164505_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0164505_45	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0164505_45	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0164505_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0164505_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0164505_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0164505_46	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0164505_46	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0164505_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0164505_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0164505_46	COG	COG4926	Phage-related protein	NA
UHGV-0164505_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0164505_51	PHROG	phrog_27545	NA	unknown function
UHGV-0164505_51	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0164505_51	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0164505_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0164505_52	PHROG	phrog_435	endolysin	lysis
UHGV-0164505_52	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0164505_52	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0164505_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0164505_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0164505_52	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0164505_53	PHROG	phrog_9428	NA	unknown function
UHGV-0164505_53	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-0164505_53	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0164505_54	PHROG	phrog_263	holin	lysis
UHGV-0164505_54	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0164505_54	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0164505_54	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0164505_54	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0164505_54	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0164505_58	PHROG	phrog_289	GTP-binding domain	other
UHGV-0164505_58	UniRef90	UniRef90_UPI001BB42FF0	SLOG family protein	NA
UHGV-0164505_58	eggNOG-mapper	195253.Syn6312_2892	NA	NA
UHGV-0164505_58	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0164505_58	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0164505_59	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0164505_59	UniRef90	UniRef90_A0A358LHG7	XRE family transcriptional regulator	NA
UHGV-0164505_59	eggNOG-mapper	97139.C824_03539	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0164505_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0164505_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0164505_59	Structural annotation	PF13443, NF041951, COG3655	NA	NA