UHGV-0164527

Genome information

Genome length 18,791 bps

CDS count 25

Completeness 99.28% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164527
vOTU ID	vOTU-069278
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_548762
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.29
Jumbo phage	No

Genome content
Genome length	18,791 bps
GC content	54.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	96.35%
Average CDS length	728.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164527_4	Structural annotation	PF13069	NA	NA
UHGV-0164527_8	Structural annotation	PF17548, MF_00273	NA	NA
UHGV-0164527_9	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164527_9	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0164527_9	Structural annotation	PF17427	NA	NA
UHGV-0164527_10	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-0164527_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0164527_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0164527_11	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-0164527_11	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0164527_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0164527_11	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0164527_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0164527_13	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0164527_13	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0164527_13	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0164527_14	PHROG	phrog_2248	tail protein	tail
UHGV-0164527_14	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-0164527_14	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0164527_14	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0164527_14	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0164527_14	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0164527_15	PHROG	phrog_2038	upper collar connector	connector
UHGV-0164527_15	UniRef90	UniRef90_A0A3G3LXU8	Upper collar protein	NA
UHGV-0164527_15	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0164527_15	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0164527_15	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0164527_16	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0164527_16	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0164527_16	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0164527_19	UniRef90	UniRef90_UPI0010FE784F	SGNH/GDSL hydrolase family protein	NA
UHGV-0164527_19	eggNOG-mapper	1150399.AQYK01000001_gene1714	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0164527_19	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0164527_19	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0164527_19	Structural annotation	PF13472, NF007819, COG2755	NA	NA
UHGV-0164527_20	UniRef90	UniRef90_A0A6G5XVW6	NlpC/P60 domain-containing protein	NA
UHGV-0164527_20	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0164527_20	Structural annotation	NF008096, COG0791	NA	NA
UHGV-0164527_21	PHROG	phrog_2150	terminase	head and packaging
UHGV-0164527_21	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-0164527_21	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0164527_21	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0164527_21	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164527_22	PHROG	phrog_199	holin	lysis
UHGV-0164527_22	UniRef90	UniRef90_U6S4E3	Toxin secretion/phage lysis holin	NA
UHGV-0164527_22	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0164527_22	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0164527_22	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0164527_22	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0164527_23	KOfam	K07273	acm; lysozyme	NA
UHGV-0164527_23	PHROG	phrog_291	endolysin	lysis
UHGV-0164527_23	UniRef90	UniRef90_A0A4P6DVZ7	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0164527_23	eggNOG-mapper	158787.BSCA_0989	Glycosyl hydrolases family 25	NA
UHGV-0164527_23	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0164527_23	Pfam	PF01476	LysM domain	LysM
UHGV-0164527_23	COG	COG1388	LysM repeat	NA
UHGV-0164527_23	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA