UHGV-0164550

Genome information

vOTU vOTU-002050

Genome length 42,786 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164550
vOTU ID	vOTU-002050
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_501466
BioSample	SAMN06110221
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13
Jumbo phage	No

Genome content
Genome length	42,786 bps
GC content	58.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.46%
Average CDS length	658.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164550_1	PHROG	phrog_22978	NA	unknown function
UHGV-0164550_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0164550_1	Structural annotation	PF18819	NA	NA
UHGV-0164550_2	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0164550_2	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0164550_3	PHROG	phrog_12105	NA	unknown function
UHGV-0164550_3	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0164550_5	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0164550_5	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0164550_5	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0164550_5	Pfam	PF13252	NA	DUF4043
UHGV-0164550_5	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0164550_5	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0164550_6	PHROG	phrog_13908	NA	unknown function
UHGV-0164550_6	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0164550_7	PHROG	phrog_156	portal protein	head and packaging
UHGV-0164550_7	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0164550_7	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0164550_11	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0164550_11	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0164550_11	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0164550_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164550_12	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0164550_12	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0164550_12	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0164550_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0164550_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164550_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0164550_13	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0164550_13	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0164550_13	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0164550_13	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0164550_13	Structural annotation	PF16677	NA	NA
UHGV-0164550_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164550_14	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0164550_14	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0164550_15	Structural annotation	PF08271	NA	NA
UHGV-0164550_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164550_19	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0164550_19	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0164550_19	Pfam	PF06356	NA	DUF1064
UHGV-0164550_19	Structural annotation	PF06356	NA	NA
UHGV-0164550_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164550_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0164550_23	PHROG	phrog_38832	NA	unknown function
UHGV-0164550_23	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0164550_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0164550_24	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0164550_24	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0164550_24	Pfam	PF14359	NA	DUF4406
UHGV-0164550_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0164550_24	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-0164550_25	PHROG	phrog_3136	NA	unknown function
UHGV-0164550_25	UniRef90	UniRef90_UPI001C00EDA4	ASCH domain-containing protein	NA
UHGV-0164550_25	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0164550_25	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0164550_25	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0164550_26	Pfam	PF04448	NA	DUF551
UHGV-0164550_26	Structural annotation	NF041588	NA	NA
UHGV-0164550_28	eggNOG-mapper	1235792.C808_01244	NA	NA
UHGV-0164550_31	Structural annotation	PF05082	NA	NA
UHGV-0164550_34	Structural annotation	PF10548	NA	NA
UHGV-0164550_36	Structural annotation	PF15188, NF010673	NA	NA
UHGV-0164550_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164550_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164550_38	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0164550_38	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0164550_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164550_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164550_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0164550_39	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-0164550_39	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0164550_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164550_41	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0164550_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164550_42	PHROG	phrog_95	integrase	integration and excision
UHGV-0164550_42	UniRef90	UniRef90_UPI0012D934F0	recombinase family protein	NA
UHGV-0164550_42	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0164550_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164550_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-0164550_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0164550_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164550_42	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0164550_43	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0164550_43	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0164550_48	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0164550_48	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0164550_48	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-0164550_50	eggNOG-mapper	760568.Desku_0885	NA	NA
UHGV-0164550_50	Structural annotation	PF14528, PF05204, MF_01420, TIGR00647, COG3780	NA	NA
UHGV-0164550_51	Structural annotation	PF13412, MF_00674, COG1342	NA	NA
UHGV-0164550_52	PHROG	phrog_14030	NA	unknown function
UHGV-0164550_52	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0164550_52	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0164550_53	PHROG	phrog_13256	NA	unknown function
UHGV-0164550_53	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0164550_57	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0164550_57	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0164550_57	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0164550_57	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0164550_57	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0164550_57	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA
UHGV-0164550_58	PHROG	phrog_37900	NA	unknown function
UHGV-0164550_58	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0164550_58	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0164550_58	Pfam	PF19789	NA	DUF6273
UHGV-0164550_58	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0164550_58	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-0164550_59	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0164550_59	PHROG	phrog_819	tail protein	tail
UHGV-0164550_59	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-0164550_59	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0164550_59	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0164550_59	Structural annotation	PF06903	NA	NA
UHGV-0164550_60	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0164550_61	UniRef90	UniRef90_R6T5E1	PBECR3 domain-containing protein	NA
UHGV-0164550_61	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0164550_61	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA