UHGV-0164654

Genome information

Genome length 23,236 bps

CDS count 33

Completeness 53.94% (medium-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164654
vOTU ID	vOTU-016939
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_510051
BioSample	SAMN06164572
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.09
Jumbo phage	No

Genome content
Genome length	23,236 bps
GC content	42.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	88.64%
Average CDS length	632.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164654_1	KOfam	K14059	int; integrase	NA
UHGV-0164654_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0164654_1	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0164654_1	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0164654_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164654_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0164654_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0164654_3	PHROG	phrog_1914	NA	unknown function
UHGV-0164654_3	UniRef90	UniRef90_B0MKY6	Putative toxin-antitoxin system, toxin component	NA
UHGV-0164654_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0164654_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0164654_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0164654_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0164654_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0164654_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164654_4	UniRef90	UniRef90_A0A8F2U0U1	XRE family transcriptional regulator	NA
UHGV-0164654_4	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0164654_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0164654_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0164654_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164654_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0164654_5	UniRef90	UniRef90_R6S985	XRE family plasmid maintenance system antidote protein	NA
UHGV-0164654_5	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0164654_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0164654_6	PHROG	phrog_5079	NA	unknown function
UHGV-0164654_6	eggNOG-mapper	1341157.RF007C_05240	NA	NA
UHGV-0164654_7	UniRef90	UniRef90_A0A0X8VCA5	Helix-turn-helix domain protein	NA
UHGV-0164654_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0164654_7	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0164654_7	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0164654_7	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0164654_11	Structural annotation	MF_01549, TIGR02228	NA	NA
UHGV-0164654_12	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0164654_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0164654_12	UniRef90	UniRef90_UPI001D091C0C	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0164654_12	eggNOG-mapper	1291050.JAGE01000002_gene3264	sulfate reduction	NA
UHGV-0164654_12	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0164654_12	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0164654_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0164654_12	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0164654_14	PHROG	phrog_674	NA	unknown function
UHGV-0164654_14	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0164654_14	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0164654_14	Pfam	PF07083	NA	DUF1351
UHGV-0164654_14	Structural annotation	PF07083	NA	NA
UHGV-0164654_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0164654_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164654_15	UniRef90	UniRef90_A0A355KWE4	Recombinase	NA
UHGV-0164654_15	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0164654_15	Pfam	PF03837	RecT family	RecT
UHGV-0164654_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0164654_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0164654_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0164654_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0164654_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0164654_16	UniRef90	UniRef90_A0A355KXN6	Lactamase_B domain-containing protein	NA
UHGV-0164654_16	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0164654_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0164654_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0164654_16	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0164654_17	PHROG	phrog_398	NA	unknown function
UHGV-0164654_17	UniRef90	UniRef90_UPI001E4CD732	putative HNHc nuclease	NA
UHGV-0164654_17	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0164654_17	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0164654_17	Structural annotation	PF16784	NA	NA
UHGV-0164654_18	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164654_18	UniRef90	UniRef90_A0A496N4U6	NA	NA
UHGV-0164654_18	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-0164654_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0164654_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164654_18	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0164654_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0164654_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0164654_19	UniRef90	UniRef90_K1SG12	DNA replication protein (Fragment)	NA
UHGV-0164654_19	eggNOG-mapper	293826.Amet_2601	DNA replication protein	NA
UHGV-0164654_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0164654_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0164654_19	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0164654_20	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0164654_20	Structural annotation	PF14058	NA	NA
UHGV-0164654_21	PHROG	phrog_4433	NA	unknown function
UHGV-0164654_21	eggNOG-mapper	1235799.C818_00267	regulation of DNA-templated transcription, elongation	NA
UHGV-0164654_21	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0164654_21	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0164654_22	PHROG	phrog_8470	NA	unknown function
UHGV-0164654_22	UniRef90	UniRef90_UPI000496E631	PcfJ domain-containing protein	NA
UHGV-0164654_22	eggNOG-mapper	445972.ANACOL_00981	PcfJ-like protein	NA
UHGV-0164654_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0164654_22	Structural annotation	PF14284	NA	NA
UHGV-0164654_23	PHROG	phrog_3253	NA	unknown function
UHGV-0164654_23	UniRef90	UniRef90_K1TX48	Phage resolvase/integrase	NA
UHGV-0164654_23	eggNOG-mapper	272563.CD630_29420	NA	NA
UHGV-0164654_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164654_24	UniRef90	UniRef90_K1TBF4	NA	NA
UHGV-0164654_24	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0164654_24	Pfam	PF06356	NA	DUF1064
UHGV-0164654_24	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0164654_25	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0164654_25	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0164654_25	UniRef90	UniRef90_A0A173SKW1	Beta sliding clamp	NA
UHGV-0164654_25	eggNOG-mapper	1437448.AZRT01000050_gene169	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0164654_25	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0164654_25	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0164654_25	Structural annotation	PF02767, PF02768, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0164654_27	UniRef90	UniRef90_B0MKX7	NA	NA
UHGV-0164654_27	Pfam	PF04448	NA	DUF551
UHGV-0164654_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164654_28	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-0164654_28	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0164654_28	Structural annotation	PF04545	NA	NA
UHGV-0164654_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0164654_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0164654_30	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-0164654_30	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0164654_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0164654_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0164654_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0164654_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164654_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0164654_31	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-0164654_31	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0164654_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164654_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0164654_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164654_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164654_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0164654_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164654_32	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-0164654_32	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0164654_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164654_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0164654_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0164654_33	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0164654_33	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0164654_33	COG	COG2369	NA	NA