UHGV-0164683

Genome information

Genome length 28,887 bps

CDS count 43

Completeness 91.19% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164683
vOTU ID	vOTU-064645
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_502789
BioSample	SAMN06164983
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.03
Jumbo phage	No

Genome content
Genome length	28,887 bps
GC content	56.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.42%
Average CDS length	611.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164683_1	eggNOG-mapper	657322.FPR_11170	NA	NA
UHGV-0164683_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0164683_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0164683_2	UniRef90	UniRef90_A0A176U291	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0164683_2	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0164683_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0164683_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0164683_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0164683_3	UniRef90	UniRef90_R5BHJ4	Putative lipoprotein	NA
UHGV-0164683_3	eggNOG-mapper	866775.HMPREF9243_0199	NA	NA
UHGV-0164683_4	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0164683_4	PHROG	phrog_3989	NA	unknown function
UHGV-0164683_4	UniRef90	UniRef90_R5ENY0	BRCT domain-containing protein	NA
UHGV-0164683_4	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0164683_4	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0164683_4	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0164683_4	Structural annotation	PF00533, NF004844	NA	NA
UHGV-0164683_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164683_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164683_5	UniRef90	UniRef90_UPI000CDA9A02	helix-turn-helix domain-containing protein	NA
UHGV-0164683_5	eggNOG-mapper	642492.Clole_2801	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164683_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164683_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164683_5	Structural annotation	PF01381, MF_02017, NF007257, COG1396	NA	NA
UHGV-0164683_6	UniRef90	UniRef90_A0A2J4JRR6	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0164683_6	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0164683_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0164683_7	Structural annotation	PF11195	NA	NA
UHGV-0164683_8	PHROG	phrog_750	NA	unknown function
UHGV-0164683_8	eggNOG-mapper	1158610.UC3_02381	NA	NA
UHGV-0164683_8	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0164683_12	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0164683_12	UniRef90	UniRef90_A0A316MAS4	Helix-turn-helix domain-containing protein	NA
UHGV-0164683_12	eggNOG-mapper	458233.MCCL_1540	Helix-turn-helix domain	NA
UHGV-0164683_12	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0164683_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164683_12	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0164683_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0164683_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0164683_13	UniRef90	UniRef90_R5ENX5	DNA helicase	NA
UHGV-0164683_13	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0164683_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0164683_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0164683_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0164683_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0164683_14	eggNOG-mapper	1408324.JNJK01000014_gene1982	NA	NA
UHGV-0164683_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0164683_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0164683_15	UniRef90	UniRef90_R5EEH2	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-0164683_15	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0164683_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0164683_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0164683_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0164683_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0164683_16	PHROG	phrog_27290	NA	unknown function
UHGV-0164683_16	UniRef90	UniRef90_R5EBB0	ParB domain-containing protein	NA
UHGV-0164683_16	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0164683_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0164683_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0164683_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0164683_20	PHROG	phrog_3136	NA	unknown function
UHGV-0164683_20	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0164683_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0164683_20	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0164683_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164683_22	eggNOG-mapper	632245.CLP_2642	NA	NA
UHGV-0164683_22	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0164683_23	PHROG	phrog_6417	translational regulator	other
UHGV-0164683_23	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0164683_23	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0164683_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164683_24	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0164683_24	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0164683_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0164683_24	Structural annotation	TIGR02646	NA	NA
UHGV-0164683_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0164683_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0164683_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0164683_26	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0164683_26	eggNOG-mapper	365048.Q0H264_9CAUD	Phage Terminase	NA
UHGV-0164683_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0164683_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0164683_26	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0164683_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0164683_27	UniRef90	UniRef90_C0Z707	Putative portal protein	NA
UHGV-0164683_27	eggNOG-mapper	358681.BBR47_29150	Phage portal protein	NA
UHGV-0164683_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0164683_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0164683_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0164683_27	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0164683_28	KOfam	K06904	NA	NA
UHGV-0164683_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0164683_28	UniRef90	UniRef90_A0A0L6JGJ8	Phage prohead protease, HK97 family	NA
UHGV-0164683_28	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0164683_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0164683_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0164683_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0164683_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0164683_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0164683_29	UniRef90	UniRef90_A0A2V2FJ37	Phage major capsid protein	NA
UHGV-0164683_29	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0164683_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0164683_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0164683_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0164683_29	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0164683_30	PHROG	phrog_88	major tail protein	tail
UHGV-0164683_30	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0164683_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0164683_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0164683_33	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0164683_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164683_34	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0164683_36	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0164683_36	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0164683_36	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0164683_36	Structural annotation	PF20155	NA	NA
UHGV-0164683_37	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0164683_38	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-0164683_39	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0164683_39	Pfam	PF21722	Glycine-rich domain	Gly_rich_2