UHGV-0164713

Genome information

Genome length 36,586 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164713
vOTU ID	vOTU-060734
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_540209
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.43
Jumbo phage	No

Genome content
Genome length	36,586 bps
GC content	41.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.64%
Average CDS length	554.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164713_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164713_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0164713_1	UniRef90	UniRef90_A0A174HKH1	Multiple promoter invertase	NA
UHGV-0164713_1	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-0164713_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164713_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0164713_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164713_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0164713_2	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0164713_2	Structural annotation	PF14869, NF040528, COG4731	NA	NA
UHGV-0164713_3	PHROG	phrog_87	metallo-protease	other
UHGV-0164713_3	UniRef90	UniRef90_A0A415UM51	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0164713_3	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0164713_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0164713_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0164713_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0164713_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164713_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164713_5	UniRef90	UniRef90_A0A173ZB84	HTH-type transcriptional regulator immR	NA
UHGV-0164713_5	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0164713_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164713_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164713_5	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0164713_6	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-0164713_6	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0164713_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0164713_7	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0164713_7	UniRef90	UniRef90_UPI001B3C9121	ORF6C domain-containing protein	NA
UHGV-0164713_7	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0164713_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164713_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0164713_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0164713_7	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0164713_14	Structural annotation	PF16826	NA	NA
UHGV-0164713_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164713_16	UniRef90	UniRef90_A0A173ZAF2	Putative phage-type endonuclease	NA
UHGV-0164713_16	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0164713_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0164713_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0164713_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0164713_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0164713_17	PHROG	phrog_674	NA	unknown function
UHGV-0164713_17	UniRef90	UniRef90_A0A8E3MVI4	NA	NA
UHGV-0164713_17	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0164713_17	Pfam	PF07083	NA	DUF1351
UHGV-0164713_17	Structural annotation	PF07083	NA	NA
UHGV-0164713_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0164713_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164713_18	UniRef90	UniRef90_A0A173ZB66	p33	NA
UHGV-0164713_18	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0164713_18	Pfam	PF03837	RecT family	RecT
UHGV-0164713_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0164713_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0164713_18	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0164713_19	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0164713_19	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0164713_20	PHROG	phrog_1029	NA	unknown function
UHGV-0164713_20	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0164713_20	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0164713_21	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164713_21	UniRef90	UniRef90_A0A173ZD06	Holliday junction resolvase	NA
UHGV-0164713_21	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0164713_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0164713_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0164713_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0164713_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164713_22	UniRef90	UniRef90_A0A173ZAT7	NA	NA
UHGV-0164713_22	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0164713_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0164713_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164713_22	Structural annotation	PF14297	NA	NA
UHGV-0164713_24	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0164713_24	UniRef90	UniRef90_UPI00189A61B2	Lar family restriction alleviation protein	NA
UHGV-0164713_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0164713_25	PHROG	phrog_10714	NA	unknown function
UHGV-0164713_26	PHROG	phrog_20593	NA	unknown function
UHGV-0164713_26	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0164713_28	PHROG	phrog_8684	NA	unknown function
UHGV-0164713_28	UniRef90	UniRef90_A0A3E4GMQ5	YopX domain-containing protein	NA
UHGV-0164713_28	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0164713_28	Pfam	PF09643	YopX protein	YopX
UHGV-0164713_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0164713_29	PHROG	phrog_15198	NA	unknown function
UHGV-0164713_29	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-0164713_29	Pfam	PF04448	NA	DUF551
UHGV-0164713_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164713_31	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0164713_31	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0164713_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0164713_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0164713_32	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0164713_32	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0164713_32	UniRef90	UniRef90_A0A414J4J8	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0164713_32	eggNOG-mapper	1042156.CXIVA_01550	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0164713_32	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0164713_32	Structural annotation	PF07927	NA	NA
UHGV-0164713_33	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0164713_33	UniRef90	UniRef90_A0A414EIB6	HicB family protein	NA
UHGV-0164713_33	eggNOG-mapper	1280694.AUJQ01000004_gene534	NA	NA
UHGV-0164713_33	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0164713_33	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0164713_33	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0164713_34	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0164713_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164713_34	UniRef90	UniRef90_UPI00156F1D4A	HNH endonuclease	NA
UHGV-0164713_34	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0164713_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0164713_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0164713_35	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0164713_35	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0164713_35	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0164713_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0164713_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0164713_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0164713_36	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0164713_36	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0164713_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0164713_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0164713_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0164713_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0164713_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0164713_37	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0164713_37	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0164713_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0164713_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0164713_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0164713_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0164713_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0164713_38	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0164713_38	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0164713_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0164713_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0164713_38	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0164713_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0164713_39	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0164713_39	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0164713_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0164713_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0164713_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0164713_39	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0164713_41	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0164713_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0164713_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0164713_42	Structural annotation	PF05657	NA	NA
UHGV-0164713_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164713_43	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0164713_43	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0164713_44	PHROG	phrog_88	major tail protein	tail
UHGV-0164713_44	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0164713_44	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0164713_44	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0164713_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0164713_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0164713_47	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0164713_47	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0164713_47	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0164713_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0164713_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0164713_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0164713_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0164713_48	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0164713_48	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0164713_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0164713_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0164713_49	PHROG	phrog_13289	tail protein	tail
UHGV-0164713_49	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-0164713_49	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0164713_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0164713_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0164713_49	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0164713_49	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0164713_50	PHROG	phrog_14030	NA	unknown function
UHGV-0164713_50	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0164713_50	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0164713_50	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0164713_50	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0164713_50	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0164713_50	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0164713_51	COG	COG4675	Phage tail collar domain	NA
UHGV-0164713_53	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0164713_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0164713_53	UniRef90	UniRef90_UPI00156FF4F8	tyrosine-type recombinase/integrase	NA
UHGV-0164713_53	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0164713_53	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0164713_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164713_53	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0164713_53	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0164713_54	UniRef90	UniRef90_UPI001898EDCC	acyl carrier protein	NA
UHGV-0164713_54	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0164713_54	Structural annotation	PF14301	NA	NA
UHGV-0164713_55	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164713_55	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0164713_55	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0164713_56	PHROG	phrog_20274	NA	unknown function
UHGV-0164713_56	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-0164713_56	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0164713_56	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0164713_56	COG	COG4905	NA	NA
UHGV-0164713_56	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0164713_57	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0164713_57	Structural annotation	PF20124	NA	NA
UHGV-0164713_58	PHROG	phrog_4105	NA	unknown function
UHGV-0164713_58	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0164713_59	PHROG	phrog_1129	holin	lysis
UHGV-0164713_59	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0164713_59	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0164713_59	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0164713_59	Structural annotation	PF16079	NA	NA
UHGV-0164713_60	KOfam	K07273	acm; lysozyme	NA
UHGV-0164713_60	PHROG	phrog_291	endolysin	lysis
UHGV-0164713_60	UniRef90	UniRef90_UPI00156E082A	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0164713_60	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0164713_60	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0164713_60	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0164713_60	Pfam	PF01476	LysM domain	LysM
UHGV-0164713_60	COG	COG1388	LysM repeat	NA
UHGV-0164713_60	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0164713_61	UniRef90	UniRef90_UPI00189C01DF	ABC transporter substrate-binding protein	NA
UHGV-0164713_61	eggNOG-mapper	471875.RUMLAC_02779	ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components	NA
UHGV-0164713_61	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0164713_61	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA