UHGV-0164729

Genome information

Genome length 36,684 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164729
vOTU ID	vOTU-046350
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_556554
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.95
Jumbo phage	No

Genome content
Genome length	36,684 bps
GC content	29.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.04%
Average CDS length	493.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164729_1	Structural annotation	PF12363	NA	NA
UHGV-0164729_2	eggNOG-mapper	445972.ANACOL_01851	NA	NA
UHGV-0164729_2	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0164729_3	eggNOG-mapper	665956.HMPREF1032_03624	NA	NA
UHGV-0164729_3	Structural annotation	PF05657	NA	NA
UHGV-0164729_4	eggNOG-mapper	445972.ANACOL_01849	NA	NA
UHGV-0164729_4	Structural annotation	TIGR01725	NA	NA
UHGV-0164729_5	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0164729_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0164729_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-0164729_8	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-0164729_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0164729_9	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0164729_9	UniRef90	UniRef90_R6HDW5	Phage scaffold protein	NA
UHGV-0164729_9	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0164729_9	Pfam	PF14265	NA	DUF4355
UHGV-0164729_9	Structural annotation	PF14265	NA	NA
UHGV-0164729_10	PHROG	phrog_1454	NA	unknown function
UHGV-0164729_12	eggNOG-mapper	97138.C820_01986	Phage Mu protein F like protein	NA
UHGV-0164729_12	COG	COG2369	NA	NA
UHGV-0164729_13	UniRef90	UniRef90_R7IWF4	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0164729_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164729_15	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0164729_15	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164729_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164729_17	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0164729_17	UniRef90	UniRef90_R7ITA5	Putative terminase large subunit	NA
UHGV-0164729_17	eggNOG-mapper	469618.FVAG_00794	TIGRFAM Phage	NA
UHGV-0164729_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0164729_17	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0164729_17	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0164729_17	COG	COG5410	NA	NA
UHGV-0164729_17	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0164729_18	PHROG	phrog_2412	NA	unknown function
UHGV-0164729_18	UniRef90	UniRef90_A0A150NN47	NA	NA
UHGV-0164729_18	eggNOG-mapper	1203554.HMPREF1476_00247	NA	NA
UHGV-0164729_20	PHROG	phrog_3915	NA	unknown function
UHGV-0164729_22	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0164729_27	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0164729_27	Structural annotation	PF01096	NA	NA
UHGV-0164729_31	Structural annotation	PF09871, TIGR00739, COG4014	NA	NA
UHGV-0164729_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0164729_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0164729_35	UniRef90	UniRef90_UPI001BA5F7AD	site-specific DNA-methyltransferase	NA
UHGV-0164729_35	eggNOG-mapper	1121871.AUAT01000013_gene351	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0164729_35	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0164729_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0164729_35	COG	COG0863	DNA modification methylase	NA
UHGV-0164729_35	Structural annotation	PF11599, NF010253, COG0863	NA	NA
UHGV-0164729_36	UniRef90	UniRef90_A0A417H700	Site-specific DNA-methyltransferase (Fragment)	NA
UHGV-0164729_36	eggNOG-mapper	1123315.AUIP01000014_gene1936	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0164729_36	COG	COG0863	DNA modification methylase	NA
UHGV-0164729_38	UniRef90	UniRef90_UPI0018A090A4	demethylase	NA
UHGV-0164729_39	PHROG	phrog_1123	NA	unknown function
UHGV-0164729_39	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0164729_39	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0164729_39	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0164729_41	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0164729_41	eggNOG-mapper	1031288.AXAA01000044_gene1970	NA	NA
UHGV-0164729_41	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0164729_42	PHROG	phrog_7566	NA	unknown function
UHGV-0164729_42	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0164729_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0164729_43	eggNOG-mapper	445972.ANACOL_00148	NA	NA
UHGV-0164729_43	Pfam	PF05772	NinB protein	NinB
UHGV-0164729_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0164729_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164729_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164729_44	UniRef90	UniRef90_R6B7C1	Single-stranded DNA-binding protein	NA
UHGV-0164729_44	eggNOG-mapper	398512.JQKC01000002_gene1869	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0164729_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164729_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0164729_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164729_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0164729_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0164729_45	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164729_45	UniRef90	UniRef90_UPI001F0FBE15	ERF family protein	NA
UHGV-0164729_45	eggNOG-mapper	1329516.JPST01000018_gene2622	ERF superfamily	NA
UHGV-0164729_45	Pfam	PF04404	ERF superfamily	ERF
UHGV-0164729_45	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0164729_51	UniRef90	UniRef90_UPI0012B5CFF9	NA	NA
UHGV-0164729_51	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0164729_51	Pfam	PF05339	NA	DUF739
UHGV-0164729_51	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0164729_52	PHROG	phrog_9659	NA	unknown function
UHGV-0164729_53	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0164729_53	PHROG	phrog_1493	endolysin	lysis
UHGV-0164729_53	UniRef90	UniRef90_A0A352MWM3	Peptidoglycan-binding domain-containing protein	NA
UHGV-0164729_53	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0164729_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0164729_53	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0164729_53	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0164729_53	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0164729_54	Structural annotation	PF16938	NA	NA
UHGV-0164729_55	PHROG	phrog_937	hemolysin	other
UHGV-0164729_55	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-0164729_56	PHROG	phrog_2310	NA	unknown function
UHGV-0164729_59	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0164729_59	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-0164729_59	eggNOG-mapper	272562.CA_C1879	Phage minor structural protein	NA
UHGV-0164729_59	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0164729_59	COG	COG4926	Phage-related protein	NA
UHGV-0164729_60	PHROG	phrog_6616	tail protein	tail
UHGV-0164729_60	Structural annotation	PF21683, TIGR02126, COG5437	NA	NA
UHGV-0164729_61	PHROG	phrog_1194	NA	unknown function
UHGV-0164729_63	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0164729_63	UniRef90	UniRef90_R6H5W8	Phage-related protein-like protein	NA
UHGV-0164729_63	eggNOG-mapper	1232449.BAHV02000010_gene2723	domain protein	NA
UHGV-0164729_63	COG	COG1511	NA	NA
UHGV-0164729_63	Structural annotation	PF09486, NF038178, COG1382	NA	NA
UHGV-0164729_64	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0164729_64	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0164729_64	UniRef90	UniRef90_R7ITQ6	Bro-N domain-containing protein	NA
UHGV-0164729_64	eggNOG-mapper	397288.C806_04963	Phage antirepressor protein KilAC domain	NA
UHGV-0164729_64	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0164729_64	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0164729_64	COG	COG3617	Prophage antirepressor	NA
UHGV-0164729_64	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0164729_66	UniRef90	UniRef90_A0A356AIQ0	RHH_1 domain-containing protein	NA
UHGV-0164729_66	eggNOG-mapper	1105031.HMPREF1141_1146	NA	NA
UHGV-0164729_66	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0164729_68	PHROG	phrog_10292	NA	unknown function
UHGV-0164729_68	UniRef90	UniRef90_R7IWE1	TM2 domain protein	NA
UHGV-0164729_68	eggNOG-mapper	1322246.BN4_11117	TM2 domain	NA
UHGV-0164729_68	Pfam	PF05154	TM2 domain	TM2
UHGV-0164729_68	COG	COG2314	NA	NA
UHGV-0164729_68	Structural annotation	PF05154, COG2314	NA	NA