UHGV-0164732

Genome information

Genome length 41,930 bps

CDS count 60

Completeness 98.59% (high-quality)

geNomad score 0.9647

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164732
vOTU ID	vOTU-010753
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_556547
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9647
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.53
Jumbo phage	No

Genome content
Genome length	41,930 bps
GC content	37.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.95%
Average CDS length	638.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164732_1	UniRef90	UniRef90_UPI000E4CAEF9	NA	NA
UHGV-0164732_1	eggNOG-mapper	1121115.AXVN01000113_gene2365	NA	NA
UHGV-0164732_1	Pfam	PF19727	NA	DUF6219
UHGV-0164732_1	Structural annotation	PF19727	NA	NA
UHGV-0164732_2	eggNOG-mapper	411461.DORFOR_02709	NA	NA
UHGV-0164732_3	COG	COG3385	IS4 transposase InsG	NA
UHGV-0164732_4	UniRef90	UniRef90_D4MXS4	Endonuclease/Exonuclease/phosphatase family	NA
UHGV-0164732_4	eggNOG-mapper	411463.EUBVEN_02208	COG NOG13853 non supervised orthologous group	NA
UHGV-0164732_4	Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos
UHGV-0164732_4	COG	COG3568	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family	NA
UHGV-0164732_6	KOfam	K14059	int; integrase	NA
UHGV-0164732_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0164732_6	UniRef90	UniRef90_UPI001EDF286E	tyrosine-type recombinase/integrase	NA
UHGV-0164732_6	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0164732_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164732_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0164732_6	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0164732_7	UniRef90	UniRef90_A0A1Q9JQ09	TerB_N domain-containing protein	NA
UHGV-0164732_7	eggNOG-mapper	140626.JHWB01000004_gene2735	TerB N-terminal domain	NA
UHGV-0164732_7	Pfam	PF13208	TerB N-terminal domain	TerB_N
UHGV-0164732_7	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0164732_8	PHROG	phrog_2546	NA	unknown function
UHGV-0164732_8	UniRef90	UniRef90_UPI001D05CE63	hydrogenase maturation nickel metallochaperone HypA	NA
UHGV-0164732_8	eggNOG-mapper	742738.HMPREF9460_00977	zinc-ribbon domain	NA
UHGV-0164732_8	Structural annotation	PF02701	NA	NA
UHGV-0164732_9	PHROG	phrog_87	metallo-protease	other
UHGV-0164732_9	UniRef90	UniRef90_A0A173RF40	Metallopeptidase immA	NA
UHGV-0164732_9	eggNOG-mapper	742740.HMPREF9474_03480	NA	NA
UHGV-0164732_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0164732_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0164732_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164732_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164732_10	UniRef90	UniRef90_B0P3B2	DNA-binding helix-turn-helix protein	NA
UHGV-0164732_10	eggNOG-mapper	33035.JPJF01000091_gene90	addiction module antidote protein HigA	NA
UHGV-0164732_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164732_10	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0164732_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0164732_11	UniRef90	UniRef90_A0A173UNH7	HTH_8 domain-containing protein	NA
UHGV-0164732_11	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0164732_11	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0164732_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164732_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164732_14	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0164732_14	eggNOG-mapper	748224.HMPREF9436_01450	NA	NA
UHGV-0164732_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164732_14	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0164732_18	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164732_18	UniRef90	UniRef90_A0A173REG5	Putative phage-type endonuclease	NA
UHGV-0164732_18	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0164732_18	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0164732_18	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0164732_18	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0164732_18	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0164732_20	PHROG	phrog_674	NA	unknown function
UHGV-0164732_20	UniRef90	UniRef90_A0A415G8D2	NA	NA
UHGV-0164732_20	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0164732_20	Pfam	PF07083	NA	DUF1351
UHGV-0164732_20	Structural annotation	PF07083	NA	NA
UHGV-0164732_21	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0164732_21	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164732_21	UniRef90	UniRef90_A0A173RED8	p33	NA
UHGV-0164732_21	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0164732_21	Pfam	PF03837	RecT family	RecT
UHGV-0164732_21	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0164732_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0164732_21	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0164732_22	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0164732_22	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0164732_23	PHROG	phrog_1029	NA	unknown function
UHGV-0164732_23	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0164732_23	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0164732_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0164732_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164732_24	UniRef90	UniRef90_D4MWK7	Holliday junction resolvase	NA
UHGV-0164732_24	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0164732_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0164732_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0164732_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0164732_25	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0164732_25	UniRef90	UniRef90_B0P3C8	NA	NA
UHGV-0164732_25	eggNOG-mapper	537013.CLOSTMETH_01717	NA	NA
UHGV-0164732_25	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0164732_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164732_25	Structural annotation	PF14297	NA	NA
UHGV-0164732_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0164732_26	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0164732_26	UniRef90	UniRef90_UPI00156EF6FB	phage antirepressor KilAC domain-containing protein	NA
UHGV-0164732_26	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0164732_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0164732_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0164732_26	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0164732_26	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0164732_27	PHROG	phrog_17690	NA	unknown function
UHGV-0164732_27	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0164732_27	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0164732_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0164732_28	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0164732_28	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-0164732_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0164732_28	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0164732_30	PHROG	phrog_25754	NA	unknown function
UHGV-0164732_30	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0164732_30	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0164732_32	PHROG	phrog_5051	NA	unknown function
UHGV-0164732_34	Pfam	PF12664	NA	DUF3789
UHGV-0164732_36	PHROG	phrog_30258	NA	unknown function
UHGV-0164732_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164732_37	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0164732_37	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0164732_37	Structural annotation	PF02996	NA	NA
UHGV-0164732_38	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0164732_38	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0164732_38	UniRef90	UniRef90_A0A173REB1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0164732_38	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0164732_38	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0164732_38	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0164732_38	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0164732_39	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0164732_39	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0164732_39	UniRef90	UniRef90_A0A174QL13	Antitoxin HicB	NA
UHGV-0164732_39	eggNOG-mapper	411460.RUMTOR_02082	NA	NA
UHGV-0164732_39	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0164732_39	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0164732_39	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0164732_40	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0164732_40	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0164732_40	UniRef90	UniRef90_A0A1Q6KFD5	Phage portal protein	NA
UHGV-0164732_40	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0164732_40	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0164732_40	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0164732_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164732_40	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0164732_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164732_41	PHROG	phrog_10250	NA	unknown function
UHGV-0164732_41	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0164732_41	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0164732_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0164732_41	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0164732_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164732_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164732_41	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0164732_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0164732_42	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0164732_42	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0164732_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164732_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0164732_43	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0164732_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0164732_43	UniRef90	UniRef90_A0A1Q6KF97	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0164732_43	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0164732_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0164732_43	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0164732_43	COG	COG2369	NA	NA
UHGV-0164732_43	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0164732_45	PHROG	phrog_3675	NA	unknown function
UHGV-0164732_45	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0164732_45	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0164732_45	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0164732_45	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0164732_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0164732_46	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0164732_46	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0164732_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0164732_46	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0164732_47	PHROG	phrog_247	major head protein	head and packaging
UHGV-0164732_47	UniRef90	UniRef90_A0A1Q2C3W4	Phage coat protein	NA
UHGV-0164732_47	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0164732_47	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0164732_47	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0164732_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0164732_48	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0164732_49	PHROG	phrog_3366	NA	unknown function
UHGV-0164732_49	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0164732_49	Pfam	PF20536	NA	DUF6751
UHGV-0164732_49	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0164732_50	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0164732_50	UniRef90	UniRef90_UPI001C012488	minor capsid protein	NA
UHGV-0164732_50	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0164732_50	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0164732_50	Structural annotation	PF11114	NA	NA
UHGV-0164732_51	PHROG	phrog_3266	tail completion	connector
UHGV-0164732_51	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0164732_51	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0164732_51	Structural annotation	PF12691	NA	NA
UHGV-0164732_52	PHROG	phrog_3099	NA	unknown function
UHGV-0164732_52	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0164732_52	eggNOG-mapper	1151292.QEW_4530	NA	NA
UHGV-0164732_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0164732_53	PHROG	phrog_4450	NA	unknown function
UHGV-0164732_53	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0164732_53	Pfam	PF20378	NA	DUF6673
UHGV-0164732_53	Structural annotation	PF20378	NA	NA
UHGV-0164732_54	PHROG	phrog_706	NA	unknown function
UHGV-0164732_54	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0164732_54	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0164732_54	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0164732_54	Structural annotation	PF06854	NA	NA
UHGV-0164732_55	PHROG	phrog_19074	NA	unknown function
UHGV-0164732_55	UniRef90	UniRef90_A0A1Q6KF40	Phage tail tape measure protein	NA
UHGV-0164732_55	eggNOG-mapper	1235799.C818_04231	Phage tail tape measure protein, TP901 family	NA
UHGV-0164732_55	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0164732_55	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0164732_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0164732_55	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0164732_56	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0164732_56	UniRef90	UniRef90_A0A1Q2C487	MtfA protein	NA
UHGV-0164732_56	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0164732_56	COG	COG4722	Phage-related protein YomH	NA
UHGV-0164732_56	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0164732_57	PHROG	phrog_3558	tail protein	tail
UHGV-0164732_57	UniRef90	UniRef90_A0A1Q2C3W1	Prophage_tail domain-containing protein	NA
UHGV-0164732_57	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0164732_57	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0164732_57	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0164732_57	COG	COG4926	Phage-related protein	NA
UHGV-0164732_57	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0164732_58	PHROG	phrog_18608	NA	unknown function
UHGV-0164732_58	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0164732_58	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0164732_58	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0164732_59	eggNOG-mapper	1499683.CCFF01000017_gene2561	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0164732_59	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA