UHGV-0164746

Genome information

Genome length 36,556 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164746
vOTU ID	vOTU-004077
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_511323
BioSample	SAMN06165161
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.81
Jumbo phage	No

Genome content
Genome length	36,556 bps
GC content	56.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	93.48%
Average CDS length	508.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164746_1	PHROG	phrog_4433	NA	unknown function
UHGV-0164746_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0164746_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0164746_2	PHROG	phrog_16304	NA	unknown function
UHGV-0164746_2	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0164746_2	eggNOG-mapper	755731.Clo1100_1616	Phage replisome organizer	NA
UHGV-0164746_2	Pfam	PF19808	NA	DUF6291
UHGV-0164746_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164746_2	Structural annotation	PF19808	NA	NA
UHGV-0164746_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164746_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164746_3	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0164746_3	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0164746_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164746_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0164746_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164746_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0164746_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0164746_4	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164746_4	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-0164746_4	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0164746_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0164746_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0164746_5	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0164746_5	Structural annotation	PF05772	NA	NA
UHGV-0164746_6	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164746_6	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0164746_6	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0164746_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-0164746_6	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0164746_9	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0164746_9	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0164746_9	UniRef90	UniRef90_A0A844DI13	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0164746_9	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0164746_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0164746_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0164746_9	Structural annotation	PF02629, MF_00341, TIGR00478, COG1255	NA	NA
UHGV-0164746_12	PHROG	phrog_5781	NA	unknown function
UHGV-0164746_12	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0164746_12	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0164746_12	Pfam	PF14359	NA	DUF4406
UHGV-0164746_12	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0164746_12	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0164746_19	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0164746_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164746_19	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0164746_19	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0164746_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164746_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164746_21	PHROG	phrog_5610	NA	unknown function
UHGV-0164746_21	UniRef90	UniRef90_D4YEC9	NA	NA
UHGV-0164746_21	eggNOG-mapper	655812.HMPREF0061_0218	NA	NA
UHGV-0164746_21	Pfam	PF16729	NA	DUF5067
UHGV-0164746_21	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0164746_22	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-0164746_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0164746_22	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0164746_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0164746_23	PHROG	phrog_95	integrase	integration and excision
UHGV-0164746_23	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0164746_23	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0164746_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0164746_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-0164746_23	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0164746_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0164746_23	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0164746_24	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0164746_25	Structural annotation	PF12510	NA	NA
UHGV-0164746_26	PHROG	phrog_20016	NA	unknown function
UHGV-0164746_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0164746_26	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0164746_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0164746_27	PHROG	phrog_16490	NA	unknown function
UHGV-0164746_27	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0164746_28	PHROG	phrog_22984	NA	unknown function
UHGV-0164746_29	PHROG	phrog_21718	NA	unknown function
UHGV-0164746_29	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0164746_30	PHROG	phrog_3754	NA	unknown function
UHGV-0164746_30	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0164746_31	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0164746_32	PHROG	phrog_1129	holin	lysis
UHGV-0164746_32	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0164746_32	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0164746_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0164746_32	Structural annotation	PF06946	NA	NA
UHGV-0164746_33	PHROG	phrog_937	hemolysin	other
UHGV-0164746_33	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0164746_34	PHROG	phrog_21357	endolysin	lysis
UHGV-0164746_34	UniRef90	UniRef90_A0A7X5D2C6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0164746_34	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0164746_34	Pfam	PF05257	CHAP domain	CHAP
UHGV-0164746_34	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0164746_34	COG	COG1388	LysM repeat	NA
UHGV-0164746_34	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0164746_35	PHROG	phrog_21765	NA	unknown function
UHGV-0164746_35	eggNOG-mapper	476272.RUMHYD_03672	PFAM Collagen triple helix	NA
UHGV-0164746_35	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0164746_36	Structural annotation	PF08481, NF033814, COG2372	NA	NA
UHGV-0164746_38	PHROG	phrog_9534	head protein	head and packaging
UHGV-0164746_38	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0164746_38	Structural annotation	PF21567	NA	NA
UHGV-0164746_39	PHROG	phrog_538	minor tail protein	tail
UHGV-0164746_39	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0164746_39	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0164746_39	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0164746_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0164746_40	PHROG	phrog_36410	NA	unknown function
UHGV-0164746_40	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0164746_40	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0164746_40	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0164746_41	PHROG	phrog_23464	NA	unknown function
UHGV-0164746_41	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0164746_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0164746_41	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0164746_43	PHROG	phrog_885	major tail protein	tail
UHGV-0164746_43	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0164746_43	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0164746_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0164746_44	Structural annotation	PF11367	NA	NA
UHGV-0164746_45	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0164746_45	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0164746_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0164746_47	PHROG	phrog_267	major head protein	head and packaging
UHGV-0164746_47	UniRef90	UniRef90_F8UBM2	p22 coat protein	NA
UHGV-0164746_47	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-0164746_47	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0164746_48	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0164746_48	Structural annotation	PF06810	NA	NA
UHGV-0164746_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164746_49	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-0164746_49	eggNOG-mapper	683837.lse_1605	NA	NA
UHGV-0164746_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0164746_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0164746_51	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0164746_51	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0164746_51	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0164746_51	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0164746_51	COG	COG2369	NA	NA
UHGV-0164746_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0164746_52	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164746_52	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0164746_52	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164746_52	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164746_52	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0164746_53	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0164746_53	UniRef90	UniRef90_D2J053	Terminase large subunit	NA
UHGV-0164746_53	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0164746_53	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0164746_54	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0164746_54	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0164746_54	UniRef90	UniRef90_A0A1I5G7W6	Phage terminase small subunit	NA
UHGV-0164746_54	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0164746_54	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0164746_54	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0164746_54	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0164746_55	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164746_55	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0164746_55	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0164746_55	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0164746_60	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0164746_60	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0164746_60	UniRef90	UniRef90_A0A2K2TY62	Adenylyl-sulfate reductase	NA
UHGV-0164746_60	eggNOG-mapper	411902.CLOBOL_06768	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0164746_60	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0164746_60	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0164746_60	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0164746_60	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0164746_66	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164746_66	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0164746_66	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0164746_66	Structural annotation	PF17375	NA	NA
UHGV-0164746_67	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164746_67	UniRef90	UniRef90_A0A7W1N8Z0	Holliday junction endonuclease	NA
UHGV-0164746_67	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0164746_67	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0164746_67	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0164746_68	PHROG	phrog_27197	NA	unknown function
UHGV-0164746_68	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0164746_68	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0164746_68	Structural annotation	NF007410	NA	NA