UHGV-0164791

Genome information

Genome length 28,350 bps

CDS count 43

Completeness 73.64% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164791
vOTU ID	vOTU-028208
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_548359
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.99
Jumbo phage	No

Genome content
Genome length	28,350 bps
GC content	50.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	94.96%
Average CDS length	630.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164791_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0164791_1	UniRef90	UniRef90_A0A358LHG7	XRE family transcriptional regulator	NA
UHGV-0164791_1	eggNOG-mapper	97139.C824_03539	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0164791_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0164791_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0164791_1	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0164791_2	PHROG	phrog_289	GTP-binding domain	other
UHGV-0164791_2	UniRef90	UniRef90_UPI001BB42FF0	SLOG family protein	NA
UHGV-0164791_2	eggNOG-mapper	195253.Syn6312_2892	NA	NA
UHGV-0164791_2	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0164791_2	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0164791_3	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0164791_3	UniRef90	UniRef90_A0A644YJG6	NlpC/P60 domain-containing protein	NA
UHGV-0164791_3	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0164791_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0164791_3	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-0164791_4	PHROG	phrog_608	holin	lysis
UHGV-0164791_4	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0164791_4	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0164791_4	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0164791_4	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0164791_5	PHROG	phrog_1863	NA	unknown function
UHGV-0164791_5	eggNOG-mapper	1291050.JAGE01000001_gene2942	NA	NA
UHGV-0164791_6	PHROG	phrog_27545	NA	unknown function
UHGV-0164791_6	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0164791_6	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0164791_6	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0164791_9	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-0164791_9	Structural annotation	PF08481	NA	NA
UHGV-0164791_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0164791_11	UniRef90	UniRef90_UPI000CF99656	phage tail protein	NA
UHGV-0164791_11	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0164791_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0164791_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0164791_11	COG	COG4926	Phage-related protein	NA
UHGV-0164791_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0164791_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0164791_12	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0164791_12	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0164791_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0164791_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0164791_13	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0164791_13	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0164791_13	eggNOG-mapper	994573.T472_0201810	tape measure	NA
UHGV-0164791_13	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0164791_13	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0164791_14	Structural annotation	PF11836	NA	NA
UHGV-0164791_15	PHROG	phrog_88	major tail protein	tail
UHGV-0164791_15	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0164791_15	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0164791_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0164791_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0164791_16	PHROG	phrog_78	tail terminator	connector
UHGV-0164791_16	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0164791_16	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0164791_17	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0164791_17	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0164791_17	Structural annotation	TIGR01725	NA	NA
UHGV-0164791_18	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0164791_18	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0164791_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0164791_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0164791_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0164791_19	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0164791_19	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0164791_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0164791_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0164791_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0164791_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0164791_20	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0164791_20	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0164791_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0164791_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0164791_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0164791_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0164791_21	PHROG	phrog_16951	NA	unknown function
UHGV-0164791_21	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0164791_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0164791_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0164791_22	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0164791_22	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0164791_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0164791_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0164791_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0164791_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0164791_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0164791_23	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0164791_23	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0164791_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0164791_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0164791_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0164791_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0164791_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0164791_24	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0164791_24	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-0164791_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0164791_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0164791_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0164791_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0164791_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164791_25	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0164791_25	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0164791_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0164791_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0164791_25	Structural annotation	PF05766	NA	NA
UHGV-0164791_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0164791_27	eggNOG-mapper	1095750.HMPREF9970_0179	NA	NA
UHGV-0164791_27	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0164791_27	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0164791_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0164791_28	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164791_28	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0164791_28	eggNOG-mapper	1567011.A0A0A7S133_9VIRU	Endodeoxyribonuclease RusA	NA
UHGV-0164791_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0164791_30	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0164791_30	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0164791_30	UniRef90	UniRef90_UPI00164A78A3	dUTP diphosphatase	NA
UHGV-0164791_30	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0164791_30	Pfam	PF00692	dUTPase	dUTPase
UHGV-0164791_30	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0164791_30	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0164791_30	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0164791_32	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0164791_32	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0164791_32	eggNOG-mapper	1035189.HMPREF9954_1960	Replication initiation and membrane attachment	NA
UHGV-0164791_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0164791_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0164791_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0164791_32	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0164791_33	PHROG	phrog_2113	NA	unknown function
UHGV-0164791_33	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0164791_33	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0164791_33	Structural annotation	PF21715	NA	NA
UHGV-0164791_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0164791_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0164791_34	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-0164791_34	eggNOG-mapper	445972.ANACOL_01827	Single-stranded DNA-binding protein	NA
UHGV-0164791_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0164791_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0164791_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0164791_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0164791_34	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0164791_36	PHROG	phrog_7566	NA	unknown function
UHGV-0164791_36	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0164791_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0164791_37	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0164791_37	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0164791_37	Structural annotation	PF05772	NA	NA
UHGV-0164791_38	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164791_38	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0164791_38	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0164791_38	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0164791_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0164791_39	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0164791_39	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0164791_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0164791_39	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0164791_40	PHROG	phrog_14214	NA	unknown function
UHGV-0164791_40	UniRef90	UniRef90_UPI0011DF7AAD	phosphatase	NA
UHGV-0164791_42	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0164791_42	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0164791_42	UniRef90	UniRef90_A0A358WYE5	Beta sliding clamp	NA
UHGV-0164791_42	eggNOG-mapper	1105031.HMPREF1141_2306	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0164791_42	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0164791_42	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0164791_42	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0164791_42	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0164791_42	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0164791_42	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0164791_43	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0164791_43	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0164791_43	UniRef90	UniRef90_R6N9D9	DNA methylase family protein	NA
UHGV-0164791_43	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0164791_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0164791_43	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0164791_43	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA