UHGV-0164989

Genome information

Genome length 29,934 bps

CDS count 41

Completeness 74.48% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164989
vOTU ID	vOTU-022306
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_555620
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.36
Jumbo phage	No

Genome content
Genome length	29,934 bps
GC content	42.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.53%
Average CDS length	679.17 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164989_1	KOfam	K14059	int; integrase	NA
UHGV-0164989_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0164989_1	UniRef90	UniRef90_A0A374MXE7	Tyr recombinase domain-containing protein	NA
UHGV-0164989_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0164989_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0164989_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0164989_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0164989_2	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0164989_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0164989_3	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0164989_3	UniRef90	UniRef90_A0A373KVP1	XRE family transcriptional regulator	NA
UHGV-0164989_3	eggNOG-mapper	525254.HMPREF0072_0267	DNA-binding helix-turn-helix protein	NA
UHGV-0164989_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164989_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0164989_3	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0164989_5	PHROG	phrog_6058	NA	unknown function
UHGV-0164989_5	Structural annotation	NF033787	NA	NA
UHGV-0164989_7	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0164989_7	PHROG	phrog_1499	NA	unknown function
UHGV-0164989_7	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0164989_7	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0164989_7	Pfam	PF13476	AAA domain	AAA_23
UHGV-0164989_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0164989_7	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0164989_9	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164989_9	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0164989_9	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0164989_9	Pfam	PF13479	AAA domain	AAA_24
UHGV-0164989_9	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0164989_10	PHROG	phrog_2698	NA	unknown function
UHGV-0164989_10	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0164989_10	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0164989_10	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0164989_11	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0164989_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0164989_11	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0164989_11	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0164989_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0164989_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0164989_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0164989_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0164989_11	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0164989_12	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0164989_12	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0164989_12	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0164989_12	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0164989_12	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0164989_12	Pfam	PF13481	AAA domain	AAA_25
UHGV-0164989_12	COG	COG3598	RecA-family ATPase	NA
UHGV-0164989_12	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0164989_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164989_13	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0164989_13	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0164989_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0164989_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0164989_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0164989_14	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0164989_17	Pfam	PF04448	NA	DUF551
UHGV-0164989_17	Structural annotation	PF04448	NA	NA
UHGV-0164989_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0164989_19	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0164989_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0164989_19	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0164989_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0164989_20	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0164989_20	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0164989_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0164989_21	PHROG	phrog_1066	NA	unknown function
UHGV-0164989_21	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0164989_21	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0164989_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0164989_22	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0164989_22	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0164989_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0164989_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0164989_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0164989_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0164989_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0164989_23	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0164989_23	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0164989_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0164989_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0164989_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0164989_24	PHROG	phrog_21498	NA	unknown function
UHGV-0164989_24	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0164989_24	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0164989_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0164989_24	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0164989_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0164989_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0164989_25	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0164989_25	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0164989_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0164989_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0164989_25	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0164989_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0164989_26	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0164989_26	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0164989_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0164989_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0164989_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0164989_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0164989_27	PHROG	phrog_5223	neck protein	connector
UHGV-0164989_27	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0164989_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0164989_27	Structural annotation	TIGR01560	NA	NA
UHGV-0164989_28	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0164989_28	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0164989_28	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0164989_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0164989_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0164989_29	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0164989_29	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0164989_29	Structural annotation	TIGR01725	NA	NA
UHGV-0164989_30	Structural annotation	PF12691	NA	NA
UHGV-0164989_31	PHROG	phrog_885	major tail protein	tail
UHGV-0164989_31	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0164989_31	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0164989_31	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0164989_32	PHROG	phrog_1021	NA	unknown function
UHGV-0164989_32	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-0164989_34	PHROG	phrog_23464	NA	unknown function
UHGV-0164989_34	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0164989_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0164989_34	Structural annotation	COG3941	NA	NA
UHGV-0164989_35	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0164989_35	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0164989_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0164989_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0164989_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0164989_36	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0164989_36	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0164989_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0164989_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0164989_36	COG	COG4926	Phage-related protein	NA
UHGV-0164989_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0164989_37	PHROG	phrog_5302	tail protein	tail
UHGV-0164989_37	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0164989_37	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0164989_37	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0164989_37	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0164989_37	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0164989_39	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0164989_39	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0164989_40	PHROG	phrog_881	holin	lysis
UHGV-0164989_40	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0164989_40	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0164989_40	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0164989_40	Structural annotation	PF16938	NA	NA