UHGV-0165030

Genome information

Genome length 37,780 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165030
vOTU ID	vOTU-008039
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_540271
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.18
Jumbo phage	No

Genome content
Genome length	37,780 bps
GC content	50.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.98%
Average CDS length	610.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165030_2	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0165030_2	UniRef90	UniRef90_UPI001D018AC9	helix-turn-helix domain-containing protein	NA
UHGV-0165030_2	eggNOG-mapper	1111454.HMPREF1250_0298	NA	NA
UHGV-0165030_2	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0165030_4	PHROG	phrog_21498	NA	unknown function
UHGV-0165030_4	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0165030_4	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0165030_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0165030_4	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0165030_5	UniRef90	UniRef90_UPI001D006729	peptidase M24	NA
UHGV-0165030_5	eggNOG-mapper	591001.Acfer_1124	NA	NA
UHGV-0165030_6	PHROG	phrog_5867	endolysin	lysis
UHGV-0165030_6	UniRef90	UniRef90_UPI001D0182B6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0165030_6	eggNOG-mapper	500635.MITSMUL_03167	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0165030_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0165030_6	Structural annotation	MF_04111	NA	NA
UHGV-0165030_7	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-0165030_9	PHROG	phrog_24267	NA	unknown function
UHGV-0165030_9	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0165030_9	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-0165030_9	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0165030_11	eggNOG-mapper	568816.Acin_1300	NA	NA
UHGV-0165030_12	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0165030_12	UniRef90	UniRef90_UPI00041FA215	phage tail protein	NA
UHGV-0165030_12	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0165030_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0165030_12	Structural annotation	PF12571, MF_04106, COG5301	NA	NA
UHGV-0165030_13	PHROG	phrog_521	tail protein	tail
UHGV-0165030_13	UniRef90	UniRef90_UPI001EDDD349	YmfQ family protein	NA
UHGV-0165030_13	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0165030_13	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0165030_13	COG	COG3778	NA	NA
UHGV-0165030_13	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0165030_14	PHROG	phrog_6	baseplate protein	tail
UHGV-0165030_14	UniRef90	UniRef90_UPI0008F32837	baseplate J/gp47 family protein	NA
UHGV-0165030_14	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-0165030_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0165030_14	COG	COG3299	NA	NA
UHGV-0165030_14	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0165030_15	PHROG	phrog_120	baseplate protein	tail
UHGV-0165030_15	UniRef90	UniRef90_UPI0008EA0D5A	NA	NA
UHGV-0165030_15	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-0165030_15	Pfam	PF10934	NA	DUF2634
UHGV-0165030_15	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0165030_16	PHROG	phrog_579	NA	unknown function
UHGV-0165030_16	UniRef90	UniRef90_UPI000417DD77	NA	NA
UHGV-0165030_16	eggNOG-mapper	568816.Acin_1961	NA	NA
UHGV-0165030_16	Pfam	PF10844	NA	DUF2577
UHGV-0165030_16	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0165030_17	PHROG	phrog_400	tail protein	tail
UHGV-0165030_17	UniRef90	UniRef90_I0GWS1	Phage related protein	NA
UHGV-0165030_17	eggNOG-mapper	568816.Acin_1331	NLP P60 protein	NA
UHGV-0165030_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0165030_17	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0165030_18	PHROG	phrog_5184	NA	unknown function
UHGV-0165030_18	UniRef90	UniRef90_UPI0018973606	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0165030_18	eggNOG-mapper	568816.Acin_1963	LysM domain	NA
UHGV-0165030_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0165030_18	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0165030_19	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0165030_19	UniRef90	UniRef90_UPI0008E2892B	phage tail tape measure protein	NA
UHGV-0165030_19	eggNOG-mapper	568816.Acin_1333	Phage-related minor tail protein	NA
UHGV-0165030_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0165030_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0165030_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0165030_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0165030_21	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0165030_21	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-0165030_21	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0165030_21	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0165030_21	Structural annotation	PF08890	NA	NA
UHGV-0165030_22	PHROG	phrog_365	tail protein	tail
UHGV-0165030_22	UniRef90	UniRef90_UPI0008E6ECEF	phage tail tube protein	NA
UHGV-0165030_22	eggNOG-mapper	568816.Acin_1337	Phage tail tube protein	NA
UHGV-0165030_22	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0165030_22	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0165030_23	PHROG	phrog_1480	tail sheath	tail
UHGV-0165030_23	UniRef90	UniRef90_UPI001D0053A4	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0165030_23	eggNOG-mapper	568816.Acin_1969	Phage tail sheath C-terminal domain	NA
UHGV-0165030_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0165030_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0165030_23	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0165030_24	PHROG	phrog_525	NA	unknown function
UHGV-0165030_24	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-0165030_24	Pfam	PF20765	NA	DUF6838
UHGV-0165030_24	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0165030_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0165030_25	UniRef90	UniRef90_UPI0008EBDF4A	HK97 gp10 family phage protein	NA
UHGV-0165030_25	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0165030_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0165030_25	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0165030_26	PHROG	phrog_25	head closure Hc1	connector
UHGV-0165030_26	UniRef90	UniRef90_UPI001D00F759	phage head closure protein	NA
UHGV-0165030_26	eggNOG-mapper	568816.Acin_1341	Phage head-tail joining protein	NA
UHGV-0165030_26	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0165030_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0165030_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0165030_27	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0165030_27	UniRef90	UniRef90_UPI001EDE080C	head-tail connector protein	NA
UHGV-0165030_27	eggNOG-mapper	1033739.CAEU01000068_gene117	DNA packaging	NA
UHGV-0165030_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0165030_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0165030_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0165030_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0165030_28	UniRef90	UniRef90_UPI001D01823D	phage major capsid protein	NA
UHGV-0165030_28	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0165030_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0165030_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0165030_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0165030_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0165030_29	KOfam	K06904	NA	NA
UHGV-0165030_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0165030_29	UniRef90	UniRef90_UPI000417BB79	HK97 family phage prohead protease	NA
UHGV-0165030_29	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0165030_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0165030_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0165030_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0165030_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0165030_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0165030_30	UniRef90	UniRef90_UPI0008E4F720	phage portal protein	NA
UHGV-0165030_30	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0165030_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0165030_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0165030_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0165030_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0165030_31	UniRef90	UniRef90_UPI0008F04707	terminase large subunit	NA
UHGV-0165030_31	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0165030_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0165030_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0165030_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0165030_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0165030_32	PHROG	phrog_1066	NA	unknown function
UHGV-0165030_32	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-0165030_32	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0165030_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0165030_33	UniRef90	UniRef90_UPI00047CFB61	HNH endonuclease	NA
UHGV-0165030_33	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-0165030_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0165030_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0165030_34	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0165030_34	eggNOG-mapper	796940.HMPREF9628_00155	NA	NA
UHGV-0165030_34	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0165030_37	UniRef90	UniRef90_UPI001D0184F4	VRR-NUC domain-containing protein	NA
UHGV-0165030_37	eggNOG-mapper	1121423.JONT01000051_gene926	Archaeal holliday junction resolvase (hjc)	NA
UHGV-0165030_37	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0165030_37	Structural annotation	PF18743, MF_01490, NF040854, COG1591	NA	NA
UHGV-0165030_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-0165030_40	UniRef90	UniRef90_UPI001EDE7AE7	NA	NA
UHGV-0165030_40	Pfam	PF11753	NA	DUF3310
UHGV-0165030_40	Structural annotation	PF11753	NA	NA
UHGV-0165030_41	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0165030_42	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0165030_42	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0165030_42	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0165030_42	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0165030_43	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0165030_43	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0165030_43	UniRef90	UniRef90_G4Q9B5	RecA-family ATPase	NA
UHGV-0165030_43	eggNOG-mapper	568816.Acin_1395	Primase C terminal 2 (PriCT-2)	NA
UHGV-0165030_43	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0165030_43	Pfam	PF13481	AAA domain	AAA_25
UHGV-0165030_43	COG	COG3598	RecA-family ATPase	NA
UHGV-0165030_43	Structural annotation	PF13481, PF08707, MF_00348, NF004384, NF040561, COG3598, COG1467	NA	NA
UHGV-0165030_44	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0165030_44	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0165030_44	UniRef90	UniRef90_G4Q9B6	DNA or RNA helicases of superfamily II	NA
UHGV-0165030_44	eggNOG-mapper	568816.Acin_1396	helicase superfamily c-terminal domain	NA
UHGV-0165030_44	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0165030_44	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0165030_44	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0165030_44	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0165030_44	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0165030_45	PHROG	phrog_2698	NA	unknown function
UHGV-0165030_45	UniRef90	UniRef90_G4Q9B7	NA	NA
UHGV-0165030_45	eggNOG-mapper	568816.Acin_1397	NA	NA
UHGV-0165030_45	Structural annotation	PF05037	NA	NA
UHGV-0165030_46	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0165030_46	UniRef90	UniRef90_UPI001C0F250F	AAA family ATPase	NA
UHGV-0165030_46	eggNOG-mapper	568816.Acin_1398	AAA domain	NA
UHGV-0165030_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-0165030_46	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0165030_48	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0165030_48	PHROG	phrog_1499	NA	unknown function
UHGV-0165030_48	UniRef90	UniRef90_G4Q2G6	AAA_23 domain-containing protein	NA
UHGV-0165030_48	eggNOG-mapper	568816.Acin_1400	AAA ATPase domain	NA
UHGV-0165030_48	PADLOC	AAA_15	NA	NA
UHGV-0165030_48	Pfam	PF13476	AAA domain	AAA_23
UHGV-0165030_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0165030_48	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0165030_50	UniRef90	UniRef90_UPI001D016E13	LysM domain-containing protein	NA
UHGV-0165030_50	eggNOG-mapper	568816.Acin_1401	LysM domain	NA
UHGV-0165030_50	Pfam	PF01476	LysM domain	LysM
UHGV-0165030_50	COG	COG1388	LysM repeat	NA
UHGV-0165030_50	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0165030_51	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0165030_51	UniRef90	UniRef90_UPI001D02CFA2	helix-turn-helix domain-containing protein	NA
UHGV-0165030_51	eggNOG-mapper	1443125.Z962_05785	NA	NA
UHGV-0165030_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0165030_51	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0165030_51	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0165030_53	UniRef90	UniRef90_UPI001D00BC00	helix-turn-helix domain-containing protein	NA
UHGV-0165030_53	eggNOG-mapper	706434.HMPREF9429_00554	Helix-turn-helix XRE-family like proteins	NA
UHGV-0165030_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0165030_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0165030_54	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0165030_54	UniRef90	UniRef90_UPI001D025116	helix-turn-helix transcriptional regulator	NA
UHGV-0165030_54	eggNOG-mapper	568816.Acin_1404	carbohydrate binding	NA
UHGV-0165030_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165030_54	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0165030_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0165030_55	PHROG	phrog_20936	NA	unknown function
UHGV-0165030_55	Structural annotation	PF06114	NA	NA
UHGV-0165030_56	UniRef90	UniRef90_G4Q2H1	Virulence protein	NA
UHGV-0165030_56	eggNOG-mapper	568816.Acin_1405	Virulence protein RhuM family	NA
UHGV-0165030_56	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0165030_56	COG	COG3943	NA	NA
UHGV-0165030_56	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0165030_57	KOfam	K14059	int; integrase	NA
UHGV-0165030_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0165030_57	UniRef90	UniRef90_UPI001D00309B	site-specific integrase	NA
UHGV-0165030_57	eggNOG-mapper	568816.Acin_1406	Belongs to the 'phage' integrase family	NA
UHGV-0165030_57	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0165030_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0165030_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0165030_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0165030_58	KOfam	K18682	rny; ribonucrease Y [EC:3.1.-.-]	NA
UHGV-0165030_58	UniRef90	UniRef90_A0A7V6YG27	Ribonuclease Y	NA
UHGV-0165030_58	eggNOG-mapper	568816.Acin_0366	Endoribonuclease that initiates mRNA decay	NA
UHGV-0165030_58	Pfam	PF01966	HD domain	HD
UHGV-0165030_58	NCBIFam	TIGR00277.1	HDIG domain-containing protein	NA
UHGV-0165030_58	COG	COG1418	HD superfamily phosphodieaserase, includes HD domain of RNase Y	NA