UHGV-0165151

Genome information

Genome length 42,997 bps

CDS count 76

Completeness 99.90% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165151
vOTU ID	vOTU-067730
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_538021
BioSample	SAMN06164400
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.86
Jumbo phage	No

Genome content
Genome length	42,997 bps
GC content	42.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	94.10%
Average CDS length	535.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165151_3	PHROG	phrog_1863	NA	unknown function
UHGV-0165151_3	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0165151_4	PHROG	phrog_443	holin	lysis
UHGV-0165151_4	UniRef90	UniRef90_UPI00191F102F	holin	NA
UHGV-0165151_4	eggNOG-mapper	1314.HKU360_01470	NA	NA
UHGV-0165151_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0165151_4	Structural annotation	PF16945	NA	NA
UHGV-0165151_5	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0165151_5	UniRef90	UniRef90_A0A417BWH3	NA	NA
UHGV-0165151_5	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0165151_5	Pfam	PF14359	NA	DUF4406
UHGV-0165151_5	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0165151_6	PHROG	phrog_14030	NA	unknown function
UHGV-0165151_6	UniRef90	UniRef90_G5FC83	SH3b domain-containing protein	NA
UHGV-0165151_6	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-0165151_6	Structural annotation	PF08239, NF040678, COG4991	NA	NA
UHGV-0165151_8	UniRef90	UniRef90_A0A285PXT6	Winged helix-turn-helix DNA-binding domain	NA
UHGV-0165151_9	eggNOG-mapper	1408311.JNJM01000003_gene2963	NA	NA
UHGV-0165151_10	PHROG	phrog_3754	NA	unknown function
UHGV-0165151_10	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0165151_11	PHROG	phrog_21718	NA	unknown function
UHGV-0165151_11	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0165151_11	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0165151_12	PHROG	phrog_22984	NA	unknown function
UHGV-0165151_13	PHROG	phrog_16490	NA	unknown function
UHGV-0165151_13	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0165151_14	PHROG	phrog_20016	NA	unknown function
UHGV-0165151_14	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0165151_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0165151_15	Structural annotation	PF12510	NA	NA
UHGV-0165151_19	UniRef90	UniRef90_A0A416JGA1	Helix-turn-helix domain-containing protein	NA
UHGV-0165151_19	eggNOG-mapper	742765.HMPREF9457_02243	Helix-turn-helix XRE-family like proteins	NA
UHGV-0165151_19	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0165151_20	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0165151_22	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0165151_22	PHROG	phrog_95	integrase	integration and excision
UHGV-0165151_22	UniRef90	UniRef90_A0A285PUJ0	Resolvase, N terminal domain	NA
UHGV-0165151_22	eggNOG-mapper	1235798.C817_01900	Resolvase, N terminal domain	NA
UHGV-0165151_22	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0165151_22	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0165151_22	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0165151_22	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0165151_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0165151_24	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0165151_24	UniRef90	UniRef90_A0A1H0P3I6	Helix-turn-helix	NA
UHGV-0165151_24	eggNOG-mapper	459349.CLOAM0116	Evidence 5 No homology to any previously reported sequences	NA
UHGV-0165151_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165151_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0165151_24	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0165151_25	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0165151_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0165151_25	UniRef90	UniRef90_A0A4S2A8B1	XRE family transcriptional regulator	NA
UHGV-0165151_25	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0165151_25	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0165151_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165151_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0165151_25	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0165151_33	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0165151_33	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0165151_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0165151_33	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0165151_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0165151_33	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0165151_37	PHROG	phrog_13561	NA	unknown function
UHGV-0165151_37	Structural annotation	PF21441	NA	NA
UHGV-0165151_38	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0165151_38	UniRef90	UniRef90_A0A1C6CBG4	Siphovirus Gp157	NA
UHGV-0165151_38	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0165151_38	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0165151_38	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0165151_40	PHROG	phrog_14970	NA	unknown function
UHGV-0165151_40	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0165151_40	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0165151_40	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0165151_40	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0165151_41	eggNOG-mapper	991905.SL003B_3762	NA	NA
UHGV-0165151_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0165151_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0165151_42	UniRef90	UniRef90_A0A176U568	Single-stranded DNA-binding protein	NA
UHGV-0165151_42	eggNOG-mapper	796942.HMPREF9623_02068	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0165151_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0165151_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0165151_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0165151_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0165151_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0165151_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0165151_43	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0165151_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0165151_45	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0165151_45	UniRef90	UniRef90_A0A396P2Q5	Phage_rep_org_N domain-containing protein	NA
UHGV-0165151_45	eggNOG-mapper	457412.RSAG_04664	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0165151_45	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0165151_45	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0165151_45	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0165151_46	PHROG	phrog_9804	NA	unknown function
UHGV-0165151_46	UniRef90	UniRef90_F3ZVF9	Inhibitor_G39P domain-containing protein	NA
UHGV-0165151_46	eggNOG-mapper	697281.Mahau_0086	Loader and inhibitor of phage G40P	NA
UHGV-0165151_46	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0165151_48	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0165151_49	PHROG	phrog_6072	NA	unknown function
UHGV-0165151_51	PHROG	phrog_10714	NA	unknown function
UHGV-0165151_52	PHROG	phrog_6072	NA	unknown function
UHGV-0165151_53	PHROG	phrog_7566	NA	unknown function
UHGV-0165151_53	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0165151_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0165151_54	Structural annotation	PF05225, NF040595	NA	NA
UHGV-0165151_56	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0165151_56	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0165151_57	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0165151_57	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0165151_57	UniRef90	UniRef90_A0A0R1P4L1	ParB-like protein	NA
UHGV-0165151_57	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0165151_57	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0165151_57	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0165151_57	COG	COG0863	DNA modification methylase	NA
UHGV-0165151_57	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0165151_58	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0165151_58	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0165151_58	UniRef90	UniRef90_UPI0012DE0D94	site-specific DNA-methyltransferase	NA
UHGV-0165151_58	eggNOG-mapper	1104325.M7W_1347	DNA methylase	NA
UHGV-0165151_58	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0165151_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0165151_58	COG	COG0863	DNA modification methylase	NA
UHGV-0165151_58	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0165151_60	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0165151_60	PHROG	phrog_10250	NA	unknown function
UHGV-0165151_60	UniRef90	UniRef90_A0A3A9ES74	PBSX family phage terminase large subunit	NA
UHGV-0165151_60	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0165151_60	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0165151_60	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0165151_60	COG	COG1783	Phage terminase large subunit	NA
UHGV-0165151_60	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0165151_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0165151_61	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0165151_61	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0165151_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0165151_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0165151_62	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0165151_62	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0165151_62	eggNOG-mapper	1280685.AUKC01000004_gene1632	Phage Mu protein F like protein	NA
UHGV-0165151_62	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0165151_62	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0165151_62	COG	COG2369	NA	NA
UHGV-0165151_62	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0165151_63	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0165151_63	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0165151_63	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0165151_63	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0165151_63	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0165151_63	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0165151_64	Structural annotation	PF06810	NA	NA
UHGV-0165151_65	PHROG	phrog_247	major head protein	head and packaging
UHGV-0165151_65	UniRef90	UniRef90_UPI001E4E7823	phage coat protein	NA
UHGV-0165151_65	eggNOG-mapper	445335.CBN_2986	NA	NA
UHGV-0165151_65	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0165151_65	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0165151_67	PHROG	phrog_17977	NA	unknown function
UHGV-0165151_67	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0165151_67	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0165151_68	PHROG	phrog_1233	NA	unknown function
UHGV-0165151_68	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0165151_69	Structural annotation	PF11367	NA	NA
UHGV-0165151_70	PHROG	phrog_885	major tail protein	tail
UHGV-0165151_70	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0165151_70	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0165151_70	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0165151_73	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0165151_73	UniRef90	UniRef90_UPI001F456E2C	phage tail tape measure protein	NA
UHGV-0165151_73	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0165151_73	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0165151_73	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0165151_73	COG	COG5283	Phage-related tail protein	NA
UHGV-0165151_73	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0165151_74	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0165151_74	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0165151_74	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0165151_74	COG	COG4722	Phage-related protein YomH	NA
UHGV-0165151_74	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0165151_75	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0165151_75	UniRef90	UniRef90_A0A7G9G6Y3	Phage tail protein	NA
UHGV-0165151_75	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0165151_75	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0165151_75	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0165151_75	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0165151_75	COG	COG4926	Phage-related protein	NA
UHGV-0165151_75	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0165151_76	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0165151_76	PHROG	phrog_23059	tail fiber protein	tail
UHGV-0165151_76	eggNOG-mapper	1033743.CAES01000056_gene4753	NA	NA
UHGV-0165151_76	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0165151_76	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3