UHGV-0165342

Genome information

Genome length 36,196 bps

CDS count 54

Completeness 80.45% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165342
vOTU ID	vOTU-028235
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_502421
BioSample	SAMN06110337
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.66
Jumbo phage	No

Genome content
Genome length	36,196 bps
GC content	41.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.71%
Average CDS length	624.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165342_3	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0165342_3	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0165342_4	Structural annotation	PF04936	NA	NA
UHGV-0165342_6	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0165342_6	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0165342_6	UniRef90	UniRef90_A0A1C5S261	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0165342_6	eggNOG-mapper	1235798.C817_04105	C-5 cytosine-specific DNA methylase	NA
UHGV-0165342_6	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0165342_6	Pfam	PF13403	Hint domain	Hint_2
UHGV-0165342_6	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0165342_6	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0165342_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0165342_6	Structural annotation	PF05203, PF00145, MF_01420, NF011287, TIGR00675, COG1372, COG0270	NA	NA
UHGV-0165342_7	Structural annotation	NF041070	NA	NA
UHGV-0165342_8	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0165342_8	UniRef90	UniRef90_UPI001C0F2DCC	Lar family restriction alleviation protein	NA
UHGV-0165342_8	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0165342_9	PHROG	phrog_4601	NA	unknown function
UHGV-0165342_9	Structural annotation	PF17888	NA	NA
UHGV-0165342_10	PHROG	phrog_15198	NA	unknown function
UHGV-0165342_10	UniRef90	UniRef90_A0A373NR41	NA	NA
UHGV-0165342_10	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-0165342_10	Pfam	PF04448	NA	DUF551
UHGV-0165342_10	Structural annotation	PF04448	NA	NA
UHGV-0165342_14	AcrCatalog	cluster_11670	NA	NA
UHGV-0165342_16	PHROG	phrog_20593	NA	unknown function
UHGV-0165342_17	UniRef90	UniRef90_UPI001C00A328	NA	NA
UHGV-0165342_18	PHROG	phrog_8684	NA	unknown function
UHGV-0165342_18	UniRef90	UniRef90_A0A417D1R9	YopX domain-containing protein	NA
UHGV-0165342_18	eggNOG-mapper	1214217.ALNF01000014_gene1387	YopX protein	NA
UHGV-0165342_18	Pfam	PF09643	YopX protein	YopX
UHGV-0165342_18	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0165342_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0165342_19	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0165342_20	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0165342_20	Structural annotation	PF11302	NA	NA
UHGV-0165342_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0165342_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0165342_23	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0165342_23	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0165342_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0165342_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0165342_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0165342_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0165342_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0165342_23	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0165342_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0165342_25	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0165342_25	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0165342_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0165342_26	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0165342_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0165342_28	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0165342_28	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0165342_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0165342_28	COG	COG2369	NA	NA
UHGV-0165342_28	Structural annotation	PF06152	NA	NA
UHGV-0165342_29	PHROG	phrog_3754	NA	unknown function
UHGV-0165342_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0165342_30	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0165342_30	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0165342_31	PHROG	phrog_21718	NA	unknown function
UHGV-0165342_31	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0165342_32	PHROG	phrog_22984	NA	unknown function
UHGV-0165342_33	PHROG	phrog_16490	NA	unknown function
UHGV-0165342_33	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0165342_34	PHROG	phrog_20016	NA	unknown function
UHGV-0165342_34	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0165342_34	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0165342_34	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0165342_35	PHROG	phrog_28802	NA	unknown function
UHGV-0165342_35	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0165342_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0165342_36	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0165342_36	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0165342_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0165342_37	PHROG	phrog_544	major head protein	head and packaging
UHGV-0165342_37	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0165342_37	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0165342_37	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0165342_37	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0165342_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0165342_38	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0165342_40	PHROG	phrog_774	NA	unknown function
UHGV-0165342_40	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0165342_41	PHROG	phrog_18218	NA	unknown function
UHGV-0165342_41	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0165342_41	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0165342_41	Structural annotation	PF06946	NA	NA
UHGV-0165342_42	PHROG	phrog_3366	NA	unknown function
UHGV-0165342_42	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0165342_42	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0165342_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0165342_43	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0165342_43	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0165342_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0165342_43	Structural annotation	PF11114	NA	NA
UHGV-0165342_44	PHROG	phrog_3266	tail completion	connector
UHGV-0165342_44	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0165342_44	Structural annotation	PF12691	NA	NA
UHGV-0165342_45	PHROG	phrog_3099	NA	unknown function
UHGV-0165342_45	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0165342_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0165342_46	PHROG	phrog_11299	NA	unknown function
UHGV-0165342_46	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0165342_46	Structural annotation	PF10666	NA	NA
UHGV-0165342_47	PHROG	phrog_706	NA	unknown function
UHGV-0165342_47	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0165342_47	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0165342_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0165342_47	Structural annotation	PF06854	NA	NA
UHGV-0165342_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0165342_48	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0165342_48	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0165342_48	COG	COG1511	NA	NA
UHGV-0165342_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0165342_49	PHROG	phrog_1194	NA	unknown function
UHGV-0165342_49	eggNOG-mapper	394503.Ccel_3034	NA	NA
UHGV-0165342_49	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0165342_50	PHROG	phrog_6616	tail protein	tail
UHGV-0165342_50	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-0165342_50	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0165342_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0165342_51	PHROG	phrog_18444	NA	unknown function
UHGV-0165342_51	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0165342_52	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0165342_53	KOfam	K07273	acm; lysozyme	NA
UHGV-0165342_53	PHROG	phrog_6745	endolysin	lysis
UHGV-0165342_53	UniRef90	UniRef90_A0A6L8SXR6	CHAP domain-containing protein	NA
UHGV-0165342_53	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0165342_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0165342_53	Pfam	PF05257	CHAP domain	CHAP
UHGV-0165342_53	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0165342_53	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0165342_53	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0165342_54	KOfam	K06397	spoIIIAH; stage III sporulation protein AH	NA
UHGV-0165342_54	UniRef90	UniRef90_UPI0019215AAF	SpoIIIAH-like family protein	NA
UHGV-0165342_54	eggNOG-mapper	457412.RSAG_00763	SpoIIIAH-like protein	NA
UHGV-0165342_54	Pfam	PF12685	SpoIIIAH-like protein	SpoIIIAH