UHGV-0165524

Genome information

Genome length 25,349 bps

CDS count 34

Completeness 66.62% (medium-quality)

geNomad score 0.9556

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165524
vOTU ID	vOTU-028244
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_545281
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9556
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.03
Jumbo phage	No

Genome content
Genome length	25,349 bps
GC content	38.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	91.38%
Average CDS length	684.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165524_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0165524_1	PHROG	phrog_6745	endolysin	lysis
UHGV-0165524_1	UniRef90	UniRef90_E6JZS3	Glycosyl hydrolase family 25	NA
UHGV-0165524_1	eggNOG-mapper	1111121.HMPREF1247_1247	PFAM glycoside hydrolase, family 10	NA
UHGV-0165524_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0165524_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0165524_2	PHROG	phrog_13256	NA	unknown function
UHGV-0165524_2	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0165524_3	PHROG	phrog_1863	NA	unknown function
UHGV-0165524_3	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0165524_3	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0165524_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0165524_5	UniRef90	UniRef90_A0A352DNT6	Prophage_tailD1 domain-containing protein	NA
UHGV-0165524_5	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0165524_5	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0165524_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0165524_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0165524_5	COG	COG4926	Phage-related protein	NA
UHGV-0165524_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0165524_6	COG	COG5492	NA	NA
UHGV-0165524_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0165524_7	UniRef90	UniRef90_A0A0X8V9V4	Phage tail protein	NA
UHGV-0165524_7	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0165524_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0165524_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0165524_8	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0165524_8	UniRef90	UniRef90_A0A1M5PWE6	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0165524_8	eggNOG-mapper	1033737.CAEV01000029_gene286	phage tail tape measure protein	NA
UHGV-0165524_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0165524_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0165524_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0165524_9	Structural annotation	PF11836	NA	NA
UHGV-0165524_10	PHROG	phrog_88	major tail protein	tail
UHGV-0165524_10	UniRef90	UniRef90_A4J7Q7	Phage major tail protein, phi13 family	NA
UHGV-0165524_10	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0165524_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0165524_11	UniRef90	UniRef90_A4J7Q8	Phage protein, HK97 gp10 family	NA
UHGV-0165524_11	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-0165524_11	Structural annotation	TIGR01725	NA	NA
UHGV-0165524_12	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0165524_13	PHROG	phrog_19734	NA	unknown function
UHGV-0165524_13	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0165524_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0165524_14	PHROG	phrog_749	NA	unknown function
UHGV-0165524_14	UniRef90	UniRef90_A0A4Z0H451	Phage gp6-like head-tail connector protein	NA
UHGV-0165524_14	eggNOG-mapper	1347392.CCEZ01000045_gene14	NA	NA
UHGV-0165524_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0165524_15	UniRef90	UniRef90_A0A7X5KPR6	Phage major capsid protein	NA
UHGV-0165524_15	eggNOG-mapper	926561.KB900622_gene645	Phage capsid family	NA
UHGV-0165524_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0165524_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0165524_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0165524_15	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0165524_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0165524_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0165524_16	UniRef90	UniRef90_A0A3C1LXH1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0165524_16	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0165524_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0165524_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0165524_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0165524_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0165524_17	UniRef90	UniRef90_UPI00090B209C	phage portal protein	NA
UHGV-0165524_17	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0165524_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0165524_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0165524_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0165524_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0165524_18	UniRef90	UniRef90_UPI001C46A542	terminase large subunit	NA
UHGV-0165524_18	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0165524_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0165524_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0165524_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0165524_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0165524_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0165524_19	UniRef90	UniRef90_UPI001CF4C0FF	RNA polymerase subunit sigma-70	NA
UHGV-0165524_19	eggNOG-mapper	1235798.C817_02582	NA	NA
UHGV-0165524_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0165524_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0165524_20	UniRef90	UniRef90_UPI001D07BB57	HNH endonuclease	NA
UHGV-0165524_20	eggNOG-mapper	349161.Dred_2609	HNH nucleases	NA
UHGV-0165524_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0165524_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0165524_22	PHROG	phrog_1733	NA	unknown function
UHGV-0165524_22	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0165524_22	eggNOG-mapper	1262449.CP6013_1921	NA	NA
UHGV-0165524_22	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0165524_22	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0165524_23	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0165524_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0165524_23	UniRef90	UniRef90_A0A372SJ55	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0165524_23	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0165524_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0165524_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0165524_23	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0165524_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0165524_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0165524_24	UniRef90	UniRef90_R7F9X3	IstB_IS21 domain-containing protein	NA
UHGV-0165524_24	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0165524_24	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0165524_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0165524_24	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0165524_25	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0165524_25	UniRef90	UniRef90_A0A285G7C4	NA	NA
UHGV-0165524_25	eggNOG-mapper	1232447.BAHW02000014_gene820	NA	NA
UHGV-0165524_25	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0165524_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0165524_25	Structural annotation	PF14297	NA	NA
UHGV-0165524_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0165524_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0165524_27	UniRef90	UniRef90_A0A3D3XZR0	HTH cro/C1-type domain-containing protein	NA
UHGV-0165524_27	eggNOG-mapper	658086.HMPREF0994_06811	DNA-binding helix-turn-helix protein	NA
UHGV-0165524_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0165524_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165524_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0165524_27	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-0165524_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0165524_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0165524_28	eggNOG-mapper	944564.HMPREF9200_1243	sequence-specific DNA binding	NA
UHGV-0165524_28	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0165524_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0165524_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0165524_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0165524_29	UniRef90	UniRef90_U2KYY5	DNA-binding helix-turn-helix protein	NA
UHGV-0165524_29	eggNOG-mapper	411473.RUMCAL_00402	endonuclease activity	NA
UHGV-0165524_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165524_29	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-0165524_29	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0165524_33	KOfam	K14059	int; integrase	NA
UHGV-0165524_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0165524_33	UniRef90	UniRef90_UPI0005D1DBC9	site-specific integrase	NA
UHGV-0165524_33	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0165524_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0165524_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0165524_33	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0165524_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0165524_34	UniRef90	UniRef90_UPI001F2B917C	recombinase family protein	NA
UHGV-0165524_34	eggNOG-mapper	398512.JQKC01000005_gene5478	NA	NA
UHGV-0165524_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA