UHGV-0165554

Genome information

Genome length 42,987 bps

CDS count 75

Completeness 100.00% (complete)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165554
vOTU ID	vOTU-005177
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_517867
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.18
Jumbo phage	No

Genome content
Genome length	42,987 bps
GC content	50.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	92.30%
Average CDS length	532.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165554_1	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0165554_1	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0165554_1	eggNOG-mapper	1211817.CCAT010000079_gene1379	Phage tail protein	NA
UHGV-0165554_1	COG	COG4722	Phage-related protein YomH	NA
UHGV-0165554_1	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0165554_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0165554_2	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0165554_2	eggNOG-mapper	1134413.ANNK01000119_gene2432	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0165554_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0165554_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0165554_3	PHROG	phrog_9534	head protein	head and packaging
UHGV-0165554_3	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0165554_4	PHROG	phrog_2295	NA	unknown function
UHGV-0165554_4	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0165554_4	Structural annotation	PF14686, TIGR03000, COG2512	NA	NA
UHGV-0165554_9	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0165554_9	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0165554_11	PHROG	phrog_28526	NA	unknown function
UHGV-0165554_11	UniRef90	UniRef90_A0A415D4T1	NA	NA
UHGV-0165554_11	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0165554_11	Pfam	PF04255	NA	DUF433
UHGV-0165554_12	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0165554_12	PHROG	phrog_894	endolysin	lysis
UHGV-0165554_12	UniRef90	UniRef90_R5EEL2	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0165554_12	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0165554_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0165554_12	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0165554_12	COG	COG3108	NA	NA
UHGV-0165554_12	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0165554_13	PHROG	phrog_937	hemolysin	other
UHGV-0165554_13	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0165554_14	PHROG	phrog_10091	holin	lysis
UHGV-0165554_14	UniRef90	UniRef90_A0A1C6KZS6	Small integral membrane protein	NA
UHGV-0165554_14	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0165554_14	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0165554_14	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0165554_14	COG	COG5546	NA	NA
UHGV-0165554_14	Structural annotation	COG5546	NA	NA
UHGV-0165554_15	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0165554_16	PHROG	phrog_3754	NA	unknown function
UHGV-0165554_16	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0165554_17	PHROG	phrog_21718	NA	unknown function
UHGV-0165554_17	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0165554_18	PHROG	phrog_22984	NA	unknown function
UHGV-0165554_19	PHROG	phrog_16490	NA	unknown function
UHGV-0165554_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0165554_21	PHROG	phrog_20016	NA	unknown function
UHGV-0165554_21	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0165554_21	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0165554_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0165554_22	Structural annotation	PF12510	NA	NA
UHGV-0165554_25	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0165554_25	UniRef90	UniRef90_A0A2G2M2K8	AP2 domain-containing protein	NA
UHGV-0165554_25	eggNOG-mapper	1282664.H354_10780	NA	NA
UHGV-0165554_28	KOfam	K14059	int; integrase	NA
UHGV-0165554_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0165554_28	UniRef90	UniRef90_UPI001F3F7CB7	site-specific integrase	NA
UHGV-0165554_28	eggNOG-mapper	1235797.C816_02098	Belongs to the 'phage' integrase family	NA
UHGV-0165554_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0165554_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0165554_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0165554_28	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0165554_29	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0165554_30	PHROG	phrog_7974	NA	unknown function
UHGV-0165554_30	eggNOG-mapper	1408303.JNJJ01000047_gene2868	NA	NA
UHGV-0165554_30	Pfam	PF14020	NA	DUF4236
UHGV-0165554_31	UniRef90	UniRef90_A0A1Y4A0E8	SAP domain-containing protein	NA
UHGV-0165554_31	eggNOG-mapper	1280696.ATVY01000034_gene3237	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0165554_31	Pfam	PF02037	SAP domain	SAP
UHGV-0165554_31	Structural annotation	PF12688	NA	NA
UHGV-0165554_32	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0165554_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0165554_32	UniRef90	UniRef90_A0A3C2EIN3	HTH cro/C1-type domain-containing protein	NA
UHGV-0165554_32	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0165554_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0165554_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0165554_32	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0165554_35	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0165554_35	UniRef90	UniRef90_A0A354MSK6	Spo0A_C domain-containing protein	NA
UHGV-0165554_35	eggNOG-mapper	411469.EUBHAL_02044	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0165554_35	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0165554_35	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0165554_35	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0165554_36	Pfam	PF06827	Zinc finger found in FPG and IleRS	zf-FPG_IleRS
UHGV-0165554_38	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0165554_38	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0165554_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0165554_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165554_38	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0165554_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0165554_39	PHROG	phrog_7338	NA	unknown function
UHGV-0165554_39	UniRef90	UniRef90_A0A2U1CCE0	Excisionase family DNA binding protein	NA
UHGV-0165554_39	eggNOG-mapper	521460.Athe_1026	Helix-turn-helix domain	NA
UHGV-0165554_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0165554_39	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0165554_39	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0165554_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0165554_40	UniRef90	UniRef90_UPI00058B3C54	siphovirus Gp157 family protein	NA
UHGV-0165554_40	eggNOG-mapper	397290.C810_05162	Siphovirus Gp157	NA
UHGV-0165554_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0165554_40	Structural annotation	PF05565	NA	NA
UHGV-0165554_41	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0165554_41	UniRef90	UniRef90_A0A843H8D6	ATP-binding protein	NA
UHGV-0165554_41	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0165554_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0165554_42	PHROG	phrog_18107	NA	unknown function
UHGV-0165554_42	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0165554_42	Structural annotation	PF05037	NA	NA
UHGV-0165554_43	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0165554_43	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0165554_43	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0165554_43	Pfam	PF06356	NA	DUF1064
UHGV-0165554_43	Structural annotation	PF06356	NA	NA
UHGV-0165554_44	PHROG	phrog_15768	NA	unknown function
UHGV-0165554_44	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0165554_44	eggNOG-mapper	693979.Bache_0304	NA	NA
UHGV-0165554_44	Pfam	PF19808	NA	DUF6291
UHGV-0165554_44	Structural annotation	PF19808	NA	NA
UHGV-0165554_46	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0165554_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0165554_46	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0165554_46	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0165554_46	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0165554_46	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0165554_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0165554_46	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0165554_47	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0165554_47	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0165554_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0165554_48	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0165554_48	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0165554_48	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0165554_48	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0165554_48	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0165554_49	PHROG	phrog_13321	NA	unknown function
UHGV-0165554_49	UniRef90	UniRef90_UPI00030D2C45	radical SAM protein	NA
UHGV-0165554_49	eggNOG-mapper	1235797.C816_03559	PFAM Radical SAM	NA
UHGV-0165554_49	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0165554_49	COG	COG1533	DNA repair photolyase	NA
UHGV-0165554_49	Structural annotation	PF20903, MF_00917, NF033668, COG4422	NA	NA
UHGV-0165554_55	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0165554_56	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0165554_56	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0165554_57	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0165554_57	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0165554_57	UniRef90	UniRef90_A0A3D3Y046	Chromosome partitioning protein ParB	NA
UHGV-0165554_57	eggNOG-mapper	173707.Q938L7_9CAUD	helicase activity	NA
UHGV-0165554_57	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0165554_57	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0165554_57	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0165554_58	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0165554_58	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0165554_58	UniRef90	UniRef90_A0A516MP09	Putative adenine modification enzyme	NA
UHGV-0165554_58	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0165554_58	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0165554_60	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0165554_60	UniRef90	UniRef90_R9QM30	Terminase large subunit	NA
UHGV-0165554_60	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0165554_60	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0165554_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0165554_61	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0165554_61	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0165554_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0165554_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0165554_62	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0165554_62	UniRef90	UniRef90_A0A395ZWQ9	Phage_Mu_F domain-containing protein	NA
UHGV-0165554_62	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0165554_62	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0165554_62	COG	COG2369	NA	NA
UHGV-0165554_64	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0165554_64	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-0165554_64	eggNOG-mapper	509191.AEDB02000075_gene2797	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0165554_64	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0165554_64	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0165554_64	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0165554_65	PHROG	phrog_1233	NA	unknown function
UHGV-0165554_65	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0165554_66	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0165554_66	UniRef90	UniRef90_A0A139QI12	HNH homing endonuclease	NA
UHGV-0165554_66	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0165554_66	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0165554_66	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0165554_66	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0165554_66	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0165554_67	Structural annotation	PF06810	NA	NA
UHGV-0165554_68	PHROG	phrog_544	major head protein	head and packaging
UHGV-0165554_68	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0165554_68	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0165554_68	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0165554_70	PHROG	phrog_17977	NA	unknown function
UHGV-0165554_70	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0165554_70	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0165554_71	PHROG	phrog_17405	head protein	head and packaging
UHGV-0165554_71	Structural annotation	PF11367	NA	NA
UHGV-0165554_72	PHROG	phrog_885	major tail protein	tail
UHGV-0165554_72	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0165554_72	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0165554_72	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0165554_73	PHROG	phrog_18646	NA	unknown function
UHGV-0165554_74	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0165554_74	eggNOG-mapper	1203602.HMPREF1527_01082	Phage tail tape measure protein TP901	NA
UHGV-0165554_74	COG	COG5412	Phage-related protein	NA
UHGV-0165554_74	Structural annotation	PF20155, MF_04138, COG5281	NA	NA