UHGV-0165611

Genome information

Genome length 43,695 bps

CDS count 55

Completeness 99.77% (high-quality)

geNomad score 0.9568

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165611
vOTU ID	vOTU-010759
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_529449
BioSample	SAMN06164963
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9568
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6
Jumbo phage	No

Genome content
Genome length	43,695 bps
GC content	50.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.88%
Average CDS length	734.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165611_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0165611_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0165611_1	UniRef90	UniRef90_E4M819	Site-specific recombinase, phage integrase family	NA
UHGV-0165611_1	eggNOG-mapper	908612.HMPREF9720_0713	Phage integrase family	NA
UHGV-0165611_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0165611_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0165611_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0165611_2	UniRef90	UniRef90_A6LGZ6	Putative transcriptional regulator	NA
UHGV-0165611_2	eggNOG-mapper	435591.BDI_3255	Putative DNA-binding domain	NA
UHGV-0165611_2	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-0165611_2	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-0165611_3	eggNOG-mapper	1121129.KB903370_gene59	COG3209 Rhs family protein	NA
UHGV-0165611_3	COG	COG3209	NA	NA
UHGV-0165611_4	PHROG	phrog_14010	NA	unknown function
UHGV-0165611_4	eggNOG-mapper	1203611.KB894547_gene2603	NA	NA
UHGV-0165611_4	Pfam	PF20186	NA	DUF6549
UHGV-0165611_4	Structural annotation	PF20186	NA	NA
UHGV-0165611_5	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0165611_5	PHROG	phrog_3513	endolysin	lysis
UHGV-0165611_5	UniRef90	UniRef90_E4M816	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0165611_5	eggNOG-mapper	1203611.KB894547_gene2602	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0165611_5	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0165611_5	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0165611_7	PHROG	phrog_20732	NA	unknown function
UHGV-0165611_7	UniRef90	UniRef90_A0A4R2LEY9	Holin family protein	NA
UHGV-0165611_7	eggNOG-mapper	1203611.KB894547_gene2601	NA	NA
UHGV-0165611_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0165611_8	PHROG	phrog_1396	tail fiber protein	tail
UHGV-0165611_8	UniRef90	UniRef90_E4M811	Mtd_N domain-containing protein	NA
UHGV-0165611_9	UniRef90	UniRef90_UPI0019006078	tail fiber assembly protein	NA
UHGV-0165611_9	eggNOG-mapper	1203611.KB894547_gene2599	NA	NA
UHGV-0165611_10	PHROG	phrog_31660	tail fiber protein	tail
UHGV-0165611_10	UniRef90	UniRef90_E4M811	Mtd_N domain-containing protein	NA
UHGV-0165611_10	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0165611_10	Structural annotation	PF18454, PF09458, NF012201	NA	NA
UHGV-0165611_11	eggNOG-mapper	1203611.KB894547_gene2597	NA	NA
UHGV-0165611_13	eggNOG-mapper	908612.HMPREF9720_0702	NA	NA
UHGV-0165611_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0165611_14	eggNOG-mapper	908612.HMPREF9720_0701	NA	NA
UHGV-0165611_15	eggNOG-mapper	908612.HMPREF9720_0701	NA	NA
UHGV-0165611_15	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0165611_16	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0165611_16	PHROG	phrog_25337	tail length tape measure protein	tail
UHGV-0165611_16	UniRef90	UniRef90_E4M806	Phage tail tape measure protein, TP901 family	NA
UHGV-0165611_16	eggNOG-mapper	908612.HMPREF9720_0700	Phage-related minor tail protein	NA
UHGV-0165611_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0165611_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0165611_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0165611_16	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0165611_17	PHROG	phrog_25557	NA	unknown function
UHGV-0165611_17	UniRef90	UniRef90_A0A3D6E9W8	Core-binding (CB) domain-containing protein	NA
UHGV-0165611_17	eggNOG-mapper	880526.KE386488_gene461	NA	NA
UHGV-0165611_18	UniRef90	UniRef90_A0A1F3LJN6	HTH cro/C1-type domain-containing protein	NA
UHGV-0165611_18	eggNOG-mapper	908612.HMPREF9720_0698	NA	NA
UHGV-0165611_18	Pfam	PF10387	NA	DUF2442
UHGV-0165611_18	Structural annotation	PF10387, PF13560, NF041951, COG3655	NA	NA
UHGV-0165611_19	UniRef90	UniRef90_UPI0006189BD6	NA	NA
UHGV-0165611_19	eggNOG-mapper	679199.HMPREF9332_01905	NA	NA
UHGV-0165611_19	Pfam	PF13711	NA	DUF4160
UHGV-0165611_19	Structural annotation	PF13711	NA	NA
UHGV-0165611_20	Structural annotation	PF11367, COG2029	NA	NA
UHGV-0165611_21	PHROG	phrog_25418	NA	unknown function
UHGV-0165611_21	eggNOG-mapper	1203611.KB894547_gene2592	NA	NA
UHGV-0165611_22	PHROG	phrog_27760	NA	unknown function
UHGV-0165611_22	eggNOG-mapper	1203611.KB894547_gene2591	NA	NA
UHGV-0165611_22	Pfam	PF20459	NA	DUF6712
UHGV-0165611_22	Structural annotation	PF20459	NA	NA
UHGV-0165611_23	PHROG	phrog_22277	NA	unknown function
UHGV-0165611_23	eggNOG-mapper	908612.HMPREF9720_0694	NA	NA
UHGV-0165611_23	Structural annotation	PF07230, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0165611_24	PHROG	phrog_26140	NA	unknown function
UHGV-0165611_24	eggNOG-mapper	908612.HMPREF9720_0693	NA	NA
UHGV-0165611_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0165611_25	PHROG	phrog_28718	NA	unknown function
UHGV-0165611_25	UniRef90	UniRef90_E4M7Z8	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0165611_25	eggNOG-mapper	1203611.KB894547_gene2588	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0165611_25	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-0165611_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0165611_25	COG	COG0338	DNA-adenine methylase	NA
UHGV-0165611_25	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0165611_26	PHROG	phrog_17790	NA	unknown function
UHGV-0165611_26	eggNOG-mapper	908612.HMPREF9720_0691	NA	NA
UHGV-0165611_27	eggNOG-mapper	1203611.KB894547_gene2587	NA	NA
UHGV-0165611_27	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0165611_28	PHROG	phrog_20504	NA	unknown function
UHGV-0165611_28	eggNOG-mapper	1203611.KB894547_gene2586	NA	NA
UHGV-0165611_29	eggNOG-mapper	1120966.AUBU01000006_gene3211	NA	NA
UHGV-0165611_30	Structural annotation	PF03414, NF009924	NA	NA
UHGV-0165611_31	PHROG	phrog_19897	NA	unknown function
UHGV-0165611_31	eggNOG-mapper	1203611.KB894547_gene2584	NA	NA
UHGV-0165611_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0165611_32	eggNOG-mapper	1203611.KB894547_gene2583	NA	NA
UHGV-0165611_32	Structural annotation	PF05065, MF_04119, TIGR01551, COG4653	NA	NA
UHGV-0165611_33	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0165611_33	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0165611_33	UniRef90	UniRef90_A0A1Q6FXC4	Peptidase_S49 domain-containing protein	NA
UHGV-0165611_33	eggNOG-mapper	1203611.KB894547_gene2582	Peptidase, S49 (Protease IV) family protein	NA
UHGV-0165611_33	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0165611_33	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0165611_33	Structural annotation	PF01343, MF_01051, TIGR00706, COG0616	NA	NA
UHGV-0165611_42	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0165611_42	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-0165611_42	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-0165611_42	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0165611_42	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0165611_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0165611_43	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0165611_43	UniRef90	UniRef90_UPI001D05E388	DNA cytosine methyltransferase	NA
UHGV-0165611_43	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0165611_43	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0165611_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0165611_43	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0165611_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0165611_43	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0165611_44	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0165611_44	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0165611_44	UniRef90	UniRef90_UPI0018A96DED	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0165611_44	eggNOG-mapper	1203611.KB894547_gene2575	sulfate reduction	NA
UHGV-0165611_44	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0165611_44	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0165611_44	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0165611_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0165611_45	PHROG	phrog_1996	DNA methyltransferase	other
UHGV-0165611_45	UniRef90	UniRef90_UPI001EE1BD7F	DNA adenine methylase	NA
UHGV-0165611_45	eggNOG-mapper	908612.HMPREF9720_0683	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0165611_45	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0165611_45	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0165611_45	COG	COG0338	DNA-adenine methylase	NA
UHGV-0165611_45	Structural annotation	PF06962, NF008152, COG0338	NA	NA
UHGV-0165611_46	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0165611_47	UniRef90	UniRef90_UPI0018A06539	helix-turn-helix transcriptional regulator	NA
UHGV-0165611_47	eggNOG-mapper	908612.HMPREF9720_2450	NA	NA
UHGV-0165611_47	Structural annotation	NF041951, COG1396	NA	NA
UHGV-0165611_48	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0165611_48	PHROG	phrog_6444	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0165611_48	UniRef90	UniRef90_E4MB13	DNA primase	NA
UHGV-0165611_48	eggNOG-mapper	908612.HMPREF9720_2451	DNA primase catalytic core, N-terminal domain	NA
UHGV-0165611_48	PADLOC	drt-UG29	DRT	DRT
UHGV-0165611_48	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0165611_48	Pfam	PF08275	DNA primase catalytic core, N-terminal domain	DNAG_N
UHGV-0165611_48	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0165611_48	NCBIFam	TIGR01391.1	DNA primase	NA
UHGV-0165611_48	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0165611_48	HAMAP	MF_00974	DNA primase [dnaG]	NA
UHGV-0165611_48	Structural annotation	PF01807, PF08275, PF06048, MF_00974, MF_00016, TIGR01391, NF040949, COG0358, COG5519	NA	NA
UHGV-0165611_53	UniRef90	UniRef90_E4MB17	DNA-binding helix-turn-helix protein	NA
UHGV-0165611_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165611_54	UniRef90	UniRef90_UPI00047798B9	HIRAN domain-containing protein	NA
UHGV-0165611_54	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0165611_55	eggNOG-mapper	1203611.KB894547_gene2568	NA	NA
UHGV-0165611_55	Pfam	PF21786	6-fold beta flower protein	Bflower_3