UHGV-0165621

Genome information

vOTU vOTU-019674

Genome length 28,534 bps

CDS count 56

Completeness 82.55% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165621
vOTU ID	vOTU-019674
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_516656
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.22
Jumbo phage	No

Genome content
Genome length	28,534 bps
GC content	56.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.46%
Average CDS length	484.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165621_1	PHROG	phrog_104	portal protein	head and packaging
UHGV-0165621_1	UniRef90	UniRef90_A0A564SBV0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0165621_1	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0165621_1	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0165621_2	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0165621_2	UniRef90	UniRef90_UPI001F3BD4CE	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0165621_2	eggNOG-mapper	1321372.AQQB01000060_gene59	NA	NA
UHGV-0165621_5	PHROG	phrog_17688	NA	unknown function
UHGV-0165621_5	UniRef90	UniRef90_A0A564SCG0	Phage Terminase	NA
UHGV-0165621_5	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0165621_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0165621_5	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0165621_6	PHROG	phrog_36217	NA	unknown function
UHGV-0165621_6	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0165621_6	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0165621_6	Structural annotation	PF14265	NA	NA
UHGV-0165621_7	PHROG	phrog_32396	NA	unknown function
UHGV-0165621_7	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-0165621_7	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0165621_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0165621_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0165621_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0165621_9	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0165621_9	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0165621_9	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0165621_9	Pfam	PF09355	NA	Phage_Gp19
UHGV-0165621_9	Structural annotation	PF09355	NA	NA
UHGV-0165621_10	PHROG	phrog_501	head closure Hc1	connector
UHGV-0165621_10	UniRef90	UniRef90_A0A0R1K4H9	NA	NA
UHGV-0165621_10	eggNOG-mapper	1231377.C426_1734	NA	NA
UHGV-0165621_10	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0165621_11	PHROG	phrog_387	neck protein	connector
UHGV-0165621_11	UniRef90	UniRef90_Q7Y4I0	Gp44	NA
UHGV-0165621_11	eggNOG-mapper	768726.HMPREF9178_1059	NA	NA
UHGV-0165621_12	PHROG	phrog_123	tail terminator	connector
UHGV-0165621_12	UniRef90	UniRef90_Q7Y4H9	Gp45	NA
UHGV-0165621_12	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0165621_12	Structural annotation	PF06141	NA	NA
UHGV-0165621_13	PHROG	phrog_117	major tail protein	tail
UHGV-0165621_13	UniRef90	UniRef90_A0A1Q6T308	Phage tail protein	NA
UHGV-0165621_13	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0165621_13	COG	COG5492	NA	NA
UHGV-0165621_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0165621_14	PHROG	phrog_1526	NA	unknown function
UHGV-0165621_14	UniRef90	UniRef90_F3MWB0	NA	NA
UHGV-0165621_14	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0165621_15	PHROG	phrog_1633	NA	unknown function
UHGV-0165621_15	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0165621_15	eggNOG-mapper	1121864.OMO_02160	NA	NA
UHGV-0165621_15	Pfam	PF17318	NA	DUF5361
UHGV-0165621_15	Structural annotation	PF17318	NA	NA
UHGV-0165621_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0165621_16	UniRef90	UniRef90_A0A316Q0J4	PblA	NA
UHGV-0165621_16	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0165621_16	COG	COG1511	NA	NA
UHGV-0165621_16	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0165621_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0165621_17	UniRef90	UniRef90_A0A8J6IR89	Phage tail family protein	NA
UHGV-0165621_17	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0165621_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0165621_17	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0165621_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0165621_18	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0165621_18	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0165621_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0165621_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0165621_19	PHROG	phrog_1220	head protein	head and packaging
UHGV-0165621_19	eggNOG-mapper	936375.HMPREF1152_1087	NA	NA
UHGV-0165621_19	Structural annotation	PF20747	NA	NA
UHGV-0165621_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0165621_21	PHROG	phrog_291	endolysin	lysis
UHGV-0165621_21	UniRef90	UniRef90_UPI00195E5E78	glycoside hydrolase family 25 protein	NA
UHGV-0165621_21	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0165621_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0165621_21	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0165621_21	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0165621_22	PHROG	phrog_1009	NA	unknown function
UHGV-0165621_22	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0165621_23	PHROG	phrog_1129	holin	lysis
UHGV-0165621_23	UniRef90	UniRef90_UPI00164CD48B	phage holin family protein	NA
UHGV-0165621_23	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0165621_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0165621_23	Structural annotation	PF06946	NA	NA
UHGV-0165621_24	PHROG	phrog_1847	NA	unknown function
UHGV-0165621_24	UniRef90	UniRef90_UPI001F27CFAE	NA	NA
UHGV-0165621_24	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-0165621_24	Pfam	PF13250	NA	DUF4041
UHGV-0165621_24	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0165621_26	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0165621_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0165621_26	UniRef90	UniRef90_A0A6N7WRP8	Helix-turn-helix transcriptional regulator	NA
UHGV-0165621_26	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0165621_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0165621_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0165621_26	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0165621_31	eggNOG-mapper	645991.Sgly_0367	NA	NA
UHGV-0165621_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0165621_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0165621_35	UniRef90	UniRef90_UPI001E572781	ERF family protein	NA
UHGV-0165621_35	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0165621_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0165621_35	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0165621_36	PHROG	phrog_1389	NA	unknown function
UHGV-0165621_36	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0165621_36	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0165621_37	PHROG	phrog_7566	NA	unknown function
UHGV-0165621_37	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0165621_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0165621_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0165621_39	UniRef90	UniRef90_A0A4R1QLL2	Single-stranded DNA-binding protein	NA
UHGV-0165621_39	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0165621_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0165621_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0165621_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0165621_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0165621_39	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0165621_40	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0165621_40	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0165621_40	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-0165621_40	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-0165621_40	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0165621_40	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0165621_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0165621_40	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0165621_41	Structural annotation	PF11417	NA	NA
UHGV-0165621_42	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0165621_42	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0165621_42	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0165621_44	eggNOG-mapper	886882.PPSC2_p0386	NA	NA
UHGV-0165621_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0165621_45	UniRef90	UniRef90_UPI001F4011B8	helix-turn-helix domain-containing protein	NA
UHGV-0165621_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0165621_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0165621_47	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0165621_47	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0165621_47	UniRef90	UniRef90_UPI0010627E7E	DNA adenine methylase	NA
UHGV-0165621_47	eggNOG-mapper	1007103.AFHW01000155_gene1065	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0165621_47	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0165621_47	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0165621_47	COG	COG0338	DNA-adenine methylase	NA
UHGV-0165621_47	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0165621_50	PHROG	phrog_2776	NA	unknown function
UHGV-0165621_50	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0165621_50	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0165621_50	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0165621_52	UniRef90	UniRef90_A0A8J6LYN8	Lar family restriction alleviation protein	NA
UHGV-0165621_52	Pfam	PF04448	NA	DUF551
UHGV-0165621_53	Structural annotation	PF21805	NA	NA
UHGV-0165621_54	Structural annotation	PF04545	NA	NA
UHGV-0165621_56	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0165621_56	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0165621_56	UniRef90	UniRef90_A0A836PR64	Terminase small subunit (Fragment)	NA
UHGV-0165621_56	eggNOG-mapper	1462526.BN990_03868	Terminase small subunit	NA
UHGV-0165621_56	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0165621_56	COG	COG3728	Phage terminase, small subunit	NA