UHGV-0165637

Genome information

Genome length 53,785 bps

CDS count 83

Completeness 100.00% (complete)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165637
vOTU ID	vOTU-004632
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_545262
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.72
Jumbo phage	No

Genome content
Genome length	53,785 bps
GC content	33.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	92.66%
Average CDS length	604.30 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165637_1	PHROG	phrog_1909	NA	unknown function
UHGV-0165637_1	eggNOG-mapper	1458697.W6E8E8_9CAUD	NA	NA
UHGV-0165637_2	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-0165637_2	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0165637_2	UniRef90	UniRef90_A0A1W1UZM7	AAA domain (Dynein-related subfamily)	NA
UHGV-0165637_2	eggNOG-mapper	40523.A8ASZ2_BPA51	ATPase activity	NA
UHGV-0165637_2	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0165637_2	Structural annotation	PF07728, MF_00016, TIGR01650, COG0714	NA	NA
UHGV-0165637_3	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0165637_3	UniRef90	UniRef90_A0A417FQ44	DNA_ligase_aden domain-containing protein	NA
UHGV-0165637_3	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0165637_4	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0165637_5	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0165637_7	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0165637_7	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0165637_7	UniRef90	UniRef90_A0A1J4Z4W1	Cytidine deaminase	NA
UHGV-0165637_7	eggNOG-mapper	1121324.CLIT_13c01280	cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0165637_7	PADLOC	dCTPase	NA	NA
UHGV-0165637_7	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0165637_7	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0165637_7	Structural annotation	PF14437, MF_00972, TIGR02571, COG2131	NA	NA
UHGV-0165637_10	Structural annotation	PF10922	NA	NA
UHGV-0165637_11	eggNOG-mapper	742733.HMPREF9469_05055	phosphatase activity	NA
UHGV-0165637_11	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0165637_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0165637_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0165637_12	UniRef90	UniRef90_A0A7V6RLP7	Ribonuclease H	NA
UHGV-0165637_12	eggNOG-mapper	580327.Tthe_1373	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0165637_12	Pfam	PF00075	RNase H	RNase_H
UHGV-0165637_12	COG	COG0328	Ribonuclease HI	NA
UHGV-0165637_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0165637_13	Structural annotation	PF14084	NA	NA
UHGV-0165637_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0165637_15	UniRef90	UniRef90_UPI0007B4B4BF	helix-turn-helix domain-containing protein	NA
UHGV-0165637_15	eggNOG-mapper	411468.CLOSCI_00294	transposase activity	NA
UHGV-0165637_15	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0165637_15	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0165637_15	Structural annotation	PF07141	NA	NA
UHGV-0165637_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0165637_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0165637_16	UniRef90	UniRef90_UPI00101D64CF	PBSX family phage terminase large subunit	NA
UHGV-0165637_16	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0165637_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0165637_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0165637_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0165637_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0165637_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0165637_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0165637_17	UniRef90	UniRef90_UPI0008331C88	phage portal protein	NA
UHGV-0165637_17	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0165637_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0165637_18	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0165637_18	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0165637_18	eggNOG-mapper	563192.HMPREF0179_00384	Phage Mu protein F like protein	NA
UHGV-0165637_18	COG	COG2369	NA	NA
UHGV-0165637_18	Structural annotation	PF03496, PF06152, MF_04139, NF040688	NA	NA
UHGV-0165637_20	UniRef90	UniRef90_T3DAM5	Pyrimidine dimer DNA glycosylase family protein	NA
UHGV-0165637_20	eggNOG-mapper	272563.CD630_17570	Pyrimidine dimer DNA glycosylase	NA
UHGV-0165637_20	Pfam	PF03013	Pyrimidine dimer DNA glycosylase	Pyr_excise
UHGV-0165637_20	Structural annotation	PF03013, TIGR02328	NA	NA
UHGV-0165637_21	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0165637_21	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0165637_21	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0165637_21	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0165637_25	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0165637_25	eggNOG-mapper	997296.PB1_16214	NA	NA
UHGV-0165637_25	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0165637_26	PHROG	phrog_909	major head protein	head and packaging
UHGV-0165637_26	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0165637_26	Structural annotation	PF02924	NA	NA
UHGV-0165637_27	PHROG	phrog_29	major head protein	head and packaging
UHGV-0165637_27	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0165637_27	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0165637_27	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0165637_27	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0165637_28	PHROG	phrog_2724	NA	unknown function
UHGV-0165637_29	PHROG	phrog_4020	NA	unknown function
UHGV-0165637_30	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0165637_31	eggNOG-mapper	580331.Thit_1383	NA	NA
UHGV-0165637_31	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0165637_32	PHROG	phrog_7585	NA	unknown function
UHGV-0165637_32	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-0165637_32	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0165637_33	PHROG	phrog_6686	tail tube protein	tail
UHGV-0165637_33	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0165637_33	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-0165637_33	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0165637_34	PHROG	phrog_6280	NA	unknown function
UHGV-0165637_34	UniRef90	UniRef90_A0A1J0GN47	Esterase	NA
UHGV-0165637_34	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0165637_35	PHROG	phrog_6541	NA	unknown function
UHGV-0165637_35	eggNOG-mapper	1196322.A370_04057	NA	NA
UHGV-0165637_36	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0165637_36	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-0165637_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0165637_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0165637_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0165637_37	PHROG	phrog_1194	NA	unknown function
UHGV-0165637_42	Structural annotation	PF21621	NA	NA
UHGV-0165637_44	eggNOG-mapper	642492.Clole_0989	NA	NA
UHGV-0165637_45	KOfam	K07273	acm; lysozyme	NA
UHGV-0165637_45	PHROG	phrog_291	endolysin	lysis
UHGV-0165637_45	UniRef90	UniRef90_A0A1C6GH19	Autolytic lysozyme	NA
UHGV-0165637_45	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0165637_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0165637_45	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0165637_45	Structural annotation	PF01183, NF002575, COG3757	NA	NA
UHGV-0165637_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0165637_48	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0165637_48	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0165637_51	PHROG	phrog_16490	NA	unknown function
UHGV-0165637_51	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0165637_52	UniRef90	UniRef90_A0A349YP35	BclA_C domain-containing protein	NA
UHGV-0165637_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0165637_54	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0165637_58	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0165637_58	Structural annotation	PF07498, PF09465, MF_00749, NF037951, COG1862	NA	NA
UHGV-0165637_60	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0165637_60	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0165637_60	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0165637_60	eggNOG-mapper	990073.ATHU01000001_gene382	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0165637_60	PADLOC	drt-UG29	DRT	DRT
UHGV-0165637_60	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0165637_60	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0165637_60	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0165637_60	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0165637_61	Structural annotation	PF08804	NA	NA
UHGV-0165637_62	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0165637_62	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0165637_62	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0165637_62	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0165637_63	PHROG	phrog_761	thymidylate kinase	other
UHGV-0165637_63	Structural annotation	PF01591, MF_00165, NF005250, COG0125	NA	NA
UHGV-0165637_64	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-0165637_64	UniRef90	UniRef90_A0A5C8G2P3	Radical SAM protein	NA
UHGV-0165637_64	eggNOG-mapper	1229909.NSED_09995	PFAM Radical SAM domain protein	NA
UHGV-0165637_64	PADLOC	pVip-near-kinase	Viperins associated with kinases	Viperin
UHGV-0165637_64	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-0165637_66	KOfam	K00980	tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]	NA
UHGV-0165637_66	PHROG	phrog_7878	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	other
UHGV-0165637_66	UniRef90	UniRef90_A0A7C1SCU5	Cytidyltransferase	NA
UHGV-0165637_66	eggNOG-mapper	1189620.AJXL01000107_gene141	Cytidylyltransferase-like	NA
UHGV-0165637_66	Pfam	PF01467	Cytidylyltransferase-like	CTP_transf_like
UHGV-0165637_66	NCBIFam	TIGR00125.1	adenylyltransferase/cytidyltransferase family protein	NA
UHGV-0165637_66	COG	COG0615	Glycerol-3-phosphate cytidylyltransferase, cytidylyltransferase family	NA
UHGV-0165637_67	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0165637_67	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0165637_67	UniRef90	UniRef90_A0A4Y5FGW2	Thymidylate synthase	NA
UHGV-0165637_67	eggNOG-mapper	1408254.T458_24480	Thymidylate synthase	NA
UHGV-0165637_67	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0165637_67	COG	COG0207	Thymidylate synthase	NA
UHGV-0165637_67	Structural annotation	PF00303, MF_01686, NF002497, COG0207	NA	NA
UHGV-0165637_69	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0165637_69	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0165637_69	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0165637_69	eggNOG-mapper	204536.SULAZ_0041	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0165637_69	Pfam	PF02811	PHP domain	PHP
UHGV-0165637_69	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0165637_69	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0165637_69	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0165637_69	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0165637_69	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0165637_69	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0165637_73	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0165637_73	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0165637_73	UniRef90	UniRef90_A0A1F8GCE0	Protein RecA	NA
UHGV-0165637_73	eggNOG-mapper	1329250.WOSG25_030820	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0165637_73	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0165637_73	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0165637_73	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0165637_76	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0165637_76	PHROG	phrog_24603	NA	unknown function
UHGV-0165637_76	UniRef90	UniRef90_W0U6Z9	Spo0A_C domain-containing protein	NA
UHGV-0165637_76	eggNOG-mapper	1121335.Clst_2017	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0165637_76	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0165637_76	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0165637_76	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0165637_77	PHROG	phrog_6721	NA	unknown function
UHGV-0165637_77	eggNOG-mapper	478749.BRYFOR_08540	NA	NA
UHGV-0165637_77	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0165637_78	PHROG	phrog_236	nucleotide kinase	other
UHGV-0165637_78	UniRef90	UniRef90_A0A845MY30	NA	NA
UHGV-0165637_78	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-0165637_78	Pfam	PF11753	NA	DUF3310
UHGV-0165637_81	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0165637_81	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0165637_81	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0165637_81	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0165637_82	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0165637_82	PHROG	phrog_5696	NA	unknown function
UHGV-0165637_82	UniRef90	UniRef90_A0A898FVT1	N-6 DNA methylase	NA
UHGV-0165637_82	eggNOG-mapper	428125.CLOLEP_01378	N-6 DNA Methylase	NA
UHGV-0165637_82	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0165637_82	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0165637_82	Structural annotation	COG0286	NA	NA
UHGV-0165637_83	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA