UHGV-0165781

Genome information

Genome length 26,283 bps

CDS count 25

Completeness 92.80% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165781
vOTU ID	vOTU-010762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_533811
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	Yes

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.2
Jumbo phage	No

Genome content
Genome length	26,283 bps
GC content	39.30%
Genetic code	Blepharisma nuclear code (15)
CDS count	25
CDS density	89.02%
Average CDS length	939.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165781_1	eggNOG-mapper	908612.HMPREF9720_1607	NA	NA
UHGV-0165781_1	Structural annotation	PF20188, TIGR04172, COG1475	NA	NA
UHGV-0165781_3	PHROG	phrog_8278	NA	unknown function
UHGV-0165781_3	UniRef90	UniRef90_UPI0004833697	YrzE family protein	NA
UHGV-0165781_4	eggNOG-mapper	1236517.BAKO01000013_gene1451	NA	NA
UHGV-0165781_5	PHROG	phrog_3267	tail protein	tail
UHGV-0165781_5	UniRef90	UniRef90_F9D2Y8	Phage gp373 protein	NA
UHGV-0165781_5	eggNOG-mapper	908937.Prede_1341	NA	NA
UHGV-0165781_5	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-0165781_6	PHROG	phrog_38044	NA	unknown function
UHGV-0165781_6	eggNOG-mapper	908937.Prede_1342	NA	NA
UHGV-0165781_7	eggNOG-mapper	908937.Prede_1343	NA	NA
UHGV-0165781_7	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0165781_8	PHROG	phrog_24676	tail length tape measure protein	tail
UHGV-0165781_8	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-0165781_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0165781_8	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0165781_9	eggNOG-mapper	908937.Prede_1347	NA	NA
UHGV-0165781_10	PHROG	phrog_1407	major tail protein	tail
UHGV-0165781_10	UniRef90	UniRef90_UPI000DFD5B0C	phage tail tube protein	NA
UHGV-0165781_10	eggNOG-mapper	1236517.BAKO01000013_gene1445	Phage tail tube protein	NA
UHGV-0165781_10	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0165781_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0165781_11	PHROG	phrog_347	tail terminator	connector
UHGV-0165781_11	UniRef90	UniRef90_UPI000E03762E	NA	NA
UHGV-0165781_11	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-0165781_11	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0165781_12	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0165781_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0165781_12	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0165781_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0165781_13	UniRef90	UniRef90_A0A3E4T3Y7	Head-tail adaptor protein	NA
UHGV-0165781_13	eggNOG-mapper	908937.Prede_1351	Phage head-tail joining protein	NA
UHGV-0165781_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0165781_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0165781_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0165781_14	eggNOG-mapper	908937.Prede_1353	Phage capsid family	NA
UHGV-0165781_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0165781_15	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0165781_15	UniRef90	UniRef90_UPI00168B783B	GIY-YIG nuclease family protein	NA
UHGV-0165781_15	eggNOG-mapper	1458851.X2KM55_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0165781_15	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0165781_15	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0165781_15	Structural annotation	PF15653, PF07453, TIGR01453	NA	NA
UHGV-0165781_16	PHROG	phrog_617	major head protein	head and packaging
UHGV-0165781_16	UniRef90	UniRef90_F9D301	Phage capsid family protein	NA
UHGV-0165781_16	eggNOG-mapper	908937.Prede_1353	Phage capsid family	NA
UHGV-0165781_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0165781_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0165781_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0165781_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0165781_17	KOfam	K06904	NA	NA
UHGV-0165781_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0165781_17	UniRef90	UniRef90_F9D302	HK97 family phage prohead protease	NA
UHGV-0165781_17	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0165781_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0165781_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0165781_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0165781_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0165781_18	Structural annotation	PF09264	NA	NA
UHGV-0165781_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0165781_19	UniRef90	UniRef90_D7IS83	Phage portal protein, HK97 family	NA
UHGV-0165781_19	eggNOG-mapper	908937.Prede_1355	Phage portal protein	NA
UHGV-0165781_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0165781_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0165781_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0165781_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0165781_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0165781_20	UniRef90	UniRef90_D7IS84	Phage terminase large subunit	NA
UHGV-0165781_20	eggNOG-mapper	1122931.AUAE01000036_gene1072	Phage Terminase	NA
UHGV-0165781_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0165781_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0165781_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0165781_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0165781_21	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0165781_21	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0165781_21	UniRef90	UniRef90_A0A352V4U9	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0165781_21	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0165781_21	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0165781_21	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0165781_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0165781_22	UniRef90	UniRef90_UPI0005606144	phage terminase small subunit P27 family	NA
UHGV-0165781_22	eggNOG-mapper	1122931.AUAE01000036_gene1073	Phage terminase, small subunit	NA
UHGV-0165781_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0165781_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0165781_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0165781_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0165781_23	UniRef90	UniRef90_UPI000DFC6B08	DEAD/DEAH box helicase family protein	NA
UHGV-0165781_23	eggNOG-mapper	435590.BVU_2296	NA	NA
UHGV-0165781_23	Structural annotation	PF02399, MF_00965, TIGR00614, COG1201	NA	NA
UHGV-0165781_24	eggNOG-mapper	908937.Prede_2476	NA	NA
UHGV-0165781_24	Structural annotation	PF12187, MF_01490, NF040854, COG1591	NA	NA
UHGV-0165781_25	UniRef90	UniRef90_X6Q3I5	Putative lipoprotein	NA