UHGV-0165884

Genome information

Genome length 24,748 bps

CDS count 37

Completeness 60.74% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0165884
vOTU ID	vOTU-028264
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_500657
BioSample	SAMN06110070
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.94
Jumbo phage	No

Genome content
Genome length	24,748 bps
GC content	51.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	91.45%
Average CDS length	615.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0165884_1	eggNOG-mapper	1408323.JQKK01000005_gene152	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0165884_2	KOfam	K14059	int; integrase	NA
UHGV-0165884_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0165884_2	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0165884_2	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0165884_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0165884_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0165884_2	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0165884_4	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0165884_5	Structural annotation	PF12510	NA	NA
UHGV-0165884_6	PHROG	phrog_20016	NA	unknown function
UHGV-0165884_6	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0165884_6	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0165884_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0165884_7	PHROG	phrog_16490	NA	unknown function
UHGV-0165884_7	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0165884_8	PHROG	phrog_22984	NA	unknown function
UHGV-0165884_9	PHROG	phrog_21718	NA	unknown function
UHGV-0165884_9	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0165884_10	PHROG	phrog_3754	NA	unknown function
UHGV-0165884_10	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0165884_12	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-0165884_12	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-0165884_13	PHROG	phrog_1129	holin	lysis
UHGV-0165884_13	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0165884_13	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0165884_13	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0165884_13	Structural annotation	PF16079	NA	NA
UHGV-0165884_14	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0165884_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0165884_15	PHROG	phrog_291	endolysin	lysis
UHGV-0165884_15	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0165884_15	eggNOG-mapper	1226325.HMPREF1548_00748	lysozyme activity	NA
UHGV-0165884_15	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0165884_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0165884_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0165884_15	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0165884_16	PHROG	phrog_24267	NA	unknown function
UHGV-0165884_16	UniRef90	UniRef90_A0A4R2N8M2	Microcystin-dependent protein	NA
UHGV-0165884_16	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0165884_16	COG	COG4675	Phage tail collar domain	NA
UHGV-0165884_16	Structural annotation	COG4675	NA	NA
UHGV-0165884_17	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-0165884_17	Structural annotation	PF10651, NF041074	NA	NA
UHGV-0165884_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0165884_18	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-0165884_18	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0165884_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0165884_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0165884_18	COG	COG4926	Phage-related protein	NA
UHGV-0165884_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0165884_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0165884_19	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0165884_19	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0165884_19	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0165884_20	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0165884_20	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0165884_20	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0165884_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0165884_20	Structural annotation	PF20155	NA	NA
UHGV-0165884_22	PHROG	phrog_18646	NA	unknown function
UHGV-0165884_23	PHROG	phrog_885	major tail protein	tail
UHGV-0165884_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0165884_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0165884_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0165884_24	Structural annotation	PF11367	NA	NA
UHGV-0165884_25	PHROG	phrog_17977	NA	unknown function
UHGV-0165884_25	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0165884_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0165884_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0165884_27	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0165884_27	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0165884_27	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0165884_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0165884_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0165884_28	Structural annotation	PF06810	NA	NA
UHGV-0165884_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0165884_29	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0165884_29	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0165884_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0165884_30	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0165884_30	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0165884_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0165884_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0165884_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0165884_31	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0165884_31	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0165884_31	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0165884_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0165884_31	COG	COG2369	NA	NA
UHGV-0165884_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0165884_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0165884_32	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0165884_32	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0165884_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0165884_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0165884_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0165884_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0165884_33	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0165884_33	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0165884_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0165884_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0165884_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0165884_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0165884_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0165884_36	PHROG	phrog_21498	NA	unknown function
UHGV-0165884_36	UniRef90	UniRef90_F0NXT0	ParB-like nuclease	NA
UHGV-0165884_36	eggNOG-mapper	865938.Weevi_0265	DNA binding	NA
UHGV-0165884_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0165884_37	PHROG	phrog_21498	NA	unknown function
UHGV-0165884_37	UniRef90	UniRef90_UPI000CD87E9A	chromosome partitioning protein ParB	NA
UHGV-0165884_37	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0165884_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA