UHGV-0166028

Genome information

vOTU vOTU-019555

Genome length 36,257 bps

CDS count 48

Completeness 80.06% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166028
vOTU ID	vOTU-019555
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_520262
BioSample	SAMN06164640
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.02
Jumbo phage	No

Genome content
Genome length	36,257 bps
GC content	45.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.23%
Average CDS length	708.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166028_1	KOfam	K14059	int; integrase	NA
UHGV-0166028_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0166028_1	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0166028_1	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0166028_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0166028_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0166028_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0166028_2	PHROG	phrog_1914	NA	unknown function
UHGV-0166028_2	UniRef90	UniRef90_B0MKY6	Putative toxin-antitoxin system, toxin component	NA
UHGV-0166028_2	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0166028_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0166028_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0166028_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0166028_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0166028_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0166028_3	UniRef90	UniRef90_B0MKY5	DNA-binding helix-turn-helix protein	NA
UHGV-0166028_3	eggNOG-mapper	697303.Thewi_2448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0166028_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166028_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166028_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0166028_5	PHROG	phrog_2211	NA	unknown function
UHGV-0166028_5	eggNOG-mapper	935948.KE386495_gene1208	NA	NA
UHGV-0166028_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0166028_7	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0166028_7	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0166028_10	Structural annotation	PF04218, NF040595, COG3415	NA	NA
UHGV-0166028_12	PHROG	phrog_22695	NA	unknown function
UHGV-0166028_12	eggNOG-mapper	679201.HMPREF9334_00305	NA	NA
UHGV-0166028_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166028_14	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-0166028_14	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-0166028_14	Pfam	PF10926	NA	DUF2800
UHGV-0166028_14	COG	COG2887	RecB family exonuclease	NA
UHGV-0166028_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0166028_16	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0166028_16	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-0166028_16	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-0166028_16	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0166028_16	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0166028_17	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0166028_17	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0166028_17	UniRef90	UniRef90_A0A329UVL7	POLAc domain-containing protein	NA
UHGV-0166028_17	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0166028_17	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0166028_17	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0166028_17	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0166028_18	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0166028_18	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-0166028_18	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0166028_18	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0166028_18	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0166028_18	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0166028_19	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166028_19	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-0166028_19	eggNOG-mapper	1408303.JNJJ01000084_gene2552	VRR_NUC	NA
UHGV-0166028_19	Structural annotation	PF08774, NF002582	NA	NA
UHGV-0166028_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0166028_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0166028_20	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-0166028_20	eggNOG-mapper	693746.OBV_01800	snf2 family	NA
UHGV-0166028_20	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0166028_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0166028_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0166028_20	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0166028_22	PHROG	phrog_924	NA	unknown function
UHGV-0166028_22	Pfam	PF04448	NA	DUF551
UHGV-0166028_23	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0166028_23	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0166028_23	UniRef90	UniRef90_R6R5E6	Methyltransferase	NA
UHGV-0166028_23	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0166028_23	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0166028_23	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0166028_23	COG	COG0338	DNA-adenine methylase	NA
UHGV-0166028_23	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0166028_24	Structural annotation	PF07374	NA	NA
UHGV-0166028_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0166028_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0166028_25	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-0166028_25	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0166028_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0166028_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0166028_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0166028_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166028_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0166028_26	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-0166028_26	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0166028_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0166028_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0166028_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0166028_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166028_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0166028_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0166028_27	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-0166028_27	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0166028_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0166028_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0166028_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0166028_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0166028_28	UniRef90	UniRef90_A0A174ZQB9	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0166028_28	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0166028_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0166028_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0166028_28	COG	COG2369	NA	NA
UHGV-0166028_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0166028_29	Structural annotation	PF21279, NF040942	NA	NA
UHGV-0166028_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0166028_30	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0166028_30	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0166028_31	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0166028_31	UniRef90	UniRef90_A0A371P084	NA	NA
UHGV-0166028_31	eggNOG-mapper	1235800.C819_00486	NA	NA
UHGV-0166028_31	Pfam	PF14265	NA	DUF4355
UHGV-0166028_31	Structural annotation	PF14265	NA	NA
UHGV-0166028_32	PHROG	phrog_212	major head protein	head and packaging
UHGV-0166028_32	UniRef90	UniRef90_A0A8J6JGV9	Phage capsid protein	NA
UHGV-0166028_32	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0166028_32	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0166028_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0166028_33	UniRef90	UniRef90_A0A175A0L9	Phage gp6-like head-tail connector protein	NA
UHGV-0166028_33	eggNOG-mapper	764562.D7RWJ1_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0166028_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0166028_33	Structural annotation	TIGR01560	NA	NA
UHGV-0166028_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0166028_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0166028_35	UniRef90	UniRef90_A0A174ZQK8	Mu-like prophage protein gpG	NA
UHGV-0166028_35	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0166028_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0166028_35	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0166028_36	Pfam	PF11367	NA	DUF3168
UHGV-0166028_36	Structural annotation	PF05657	NA	NA
UHGV-0166028_37	PHROG	phrog_158	major tail protein	tail
UHGV-0166028_37	UniRef90	UniRef90_A0A174ZXR0	Phage tail protein	NA
UHGV-0166028_37	eggNOG-mapper	1158607.UAU_01767	Phage tail tube protein, TTP	NA
UHGV-0166028_37	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0166028_37	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0166028_39	UniRef90	UniRef90_UPI0016860472	NA	NA
UHGV-0166028_39	eggNOG-mapper	1121947.AUHK01000002_gene942	NA	NA
UHGV-0166028_39	Pfam	PF19591	NA	DUF6096
UHGV-0166028_39	Structural annotation	PF19591	NA	NA
UHGV-0166028_41	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0166028_41	eggNOG-mapper	1215915.BN193_09055	phage tail tape measure protein	NA
UHGV-0166028_41	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0166028_42	PHROG	phrog_1194	NA	unknown function
UHGV-0166028_42	Pfam	PF20458	NA	DUF6711
UHGV-0166028_43	PHROG	phrog_25468	NA	unknown function
UHGV-0166028_43	UniRef90	UniRef90_R6SRS7	Hep/Hag repeat protein	NA
UHGV-0166028_43	eggNOG-mapper	397290.C810_01268	NA	NA
UHGV-0166028_43	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0166028_45	PHROG	phrog_199	holin	lysis
UHGV-0166028_45	UniRef90	UniRef90_R6RVE6	Toxin secretion/phage lysis holin	NA
UHGV-0166028_45	eggNOG-mapper	1211817.CCAT010000008_gene975	toxin secretion phage lysis holin	NA
UHGV-0166028_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0166028_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0166028_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0166028_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0166028_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0166028_46	PHROG	phrog_291	endolysin	lysis
UHGV-0166028_46	UniRef90	UniRef90_K1RE35	Hydrolase family 25 (Fragment)	NA
UHGV-0166028_46	eggNOG-mapper	1341157.RF007C_06880	Glycosyl hydrolases family 25	NA
UHGV-0166028_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0166028_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0166028_46	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-0166028_47	PHROG	phrog_9659	NA	unknown function
UHGV-0166028_47	UniRef90	UniRef90_UPI000A26FDC2	NA	NA