UHGV-0166174

Genome information

Genome length 32,216 bps

CDS count 43

Completeness 85.69% (medium-quality)

geNomad score 0.9400

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166174
vOTU ID	vOTU-022330
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_554632
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9400
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.83
Jumbo phage	No

Genome content
Genome length	32,216 bps
GC content	40.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	83.46%
Average CDS length	628.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166174_1	PHROG	phrog_17530	NA	unknown function
UHGV-0166174_1	UniRef90	UniRef90_A0A373UVW7	INTEIN_C_TER domain-containing protein	NA
UHGV-0166174_1	eggNOG-mapper	1160721.RBI_I00618	Hint (Hedgehog/Intein) domain N-terminal region	NA
UHGV-0166174_1	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0166174_1	Pfam	PF15648	Restriction endonuclease fold toxin 5	Tox-REase-5
UHGV-0166174_1	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0166174_1	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0166174_3	UniRef90	UniRef90_A0A5R9MIU0	INTEIN_C_TER domain-containing protein	NA
UHGV-0166174_3	eggNOG-mapper	1160721.RBI_I00618	Hint (Hedgehog/Intein) domain N-terminal region	NA
UHGV-0166174_3	Pfam	PF15652	HNH/Endo VII superfamily toxin with a SHH signature	Tox-SHH
UHGV-0166174_3	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0166174_4	UniRef90	UniRef90_E9SA95	Conserved domain protein	NA
UHGV-0166174_5	UniRef90	UniRef90_A0A373Q5Q6	INTEIN_C_TER domain-containing protein	NA
UHGV-0166174_5	eggNOG-mapper	1003195.SCAT_4318	COG3209 Rhs family protein	NA
UHGV-0166174_5	Pfam	PF14412	A nuclease family of the HNH/ENDO VII superfamily with conserved AHH	AHH
UHGV-0166174_5	COG	COG3209	NA	NA
UHGV-0166174_6	UniRef90	UniRef90_A0A373Q6H2	NA	NA
UHGV-0166174_6	eggNOG-mapper	1345695.CLSA_c08400	NA	NA
UHGV-0166174_6	Pfam	PF14136	NA	DUF4303
UHGV-0166174_7	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0166174_7	UniRef90	UniRef90_A0A373Q563	Core-binding (CB) domain-containing protein	NA
UHGV-0166174_7	eggNOG-mapper	1160721.RBI_I00619	NA	NA
UHGV-0166174_8	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0166174_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0166174_8	UniRef90	UniRef90_A0A373L897	HTH cro/C1-type domain-containing protein	NA
UHGV-0166174_8	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0166174_8	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0166174_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0166174_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0166174_8	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0166174_11	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0166174_11	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0166174_11	UniRef90	UniRef90_A0A133NC96	DNA-binding helix-turn-helix protein	NA
UHGV-0166174_11	eggNOG-mapper	1121468.AUBR01000008_gene2070	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0166174_11	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0166174_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166174_11	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0166174_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0166174_12	AcrCatalog	cluster_158759	NA	NA
UHGV-0166174_13	PHROG	phrog_310	transposase	integration and excision
UHGV-0166174_13	UniRef90	UniRef90_W0U922	MU-like transposase	NA
UHGV-0166174_13	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0166174_13	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0166174_13	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0166174_13	Pfam	PF00665	Integrase core domain	rve
UHGV-0166174_13	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0166174_13	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0166174_13	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0166174_14	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0166174_14	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0166174_14	UniRef90	UniRef90_W0U9H6	DNA transposition protein	NA
UHGV-0166174_14	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0166174_14	Pfam	PF13401	AAA domain	AAA_22
UHGV-0166174_14	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0166174_14	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0166174_15	PHROG	phrog_4292	NA	unknown function
UHGV-0166174_15	eggNOG-mapper	1160721.RBI_II00553	NA	NA
UHGV-0166174_16	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0166174_16	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0166174_16	UniRef90	UniRef90_W0U909	SpoVT-AbrB domain-containing protein	NA
UHGV-0166174_16	eggNOG-mapper	1160721.RBI_II00552	SpoVT / AbrB like domain	NA
UHGV-0166174_16	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0166174_16	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0166174_17	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0166174_17	AcrCatalog	cluster_71843	NA	NA
UHGV-0166174_18	PHROG	phrog_286	NA	unknown function
UHGV-0166174_18	UniRef90	UniRef90_A0A356CXE0	Regulatory protein GemA	NA
UHGV-0166174_18	eggNOG-mapper	1160721.RBI_II00550	NA	NA
UHGV-0166174_18	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0166174_18	Structural annotation	PF06252	NA	NA
UHGV-0166174_19	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0166174_19	UniRef90	UniRef90_W0U9H5	Possible positive regulator of late transcription	NA
UHGV-0166174_19	eggNOG-mapper	1160721.RBI_II00549	Mor transcription activator	NA
UHGV-0166174_19	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0166174_19	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0166174_19	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0166174_20	PHROG	phrog_462	lipoprotein	other
UHGV-0166174_20	eggNOG-mapper	1160721.RBI_II00548	NA	NA
UHGV-0166174_21	PHROG	phrog_25462	NA	unknown function
UHGV-0166174_21	UniRef90	UniRef90_UPI000F547D8B	type VI secretion protein	NA
UHGV-0166174_21	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0166174_21	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0166174_22	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0166174_22	UniRef90	UniRef90_UPI000F520548	NA	NA
UHGV-0166174_22	eggNOG-mapper	1160721.RBI_II00546	NA	NA
UHGV-0166174_22	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0166174_22	Structural annotation	PF11985	NA	NA
UHGV-0166174_23	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0166174_23	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0166174_23	UniRef90	UniRef90_A0A374HXW9	NGN domain-containing protein	NA
UHGV-0166174_23	eggNOG-mapper	1160721.RBI_II00545	Transcription termination factor nusG	NA
UHGV-0166174_23	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0166174_23	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0166174_23	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0166174_24	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0166174_24	UniRef90	UniRef90_W0U9H3	Phage terminase, small subunit	NA
UHGV-0166174_24	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0166174_24	Structural annotation	PF07141	NA	NA
UHGV-0166174_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166174_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0166174_25	UniRef90	UniRef90_W0U8A2	Phage terminase, large subunit	NA
UHGV-0166174_25	eggNOG-mapper	1160721.RBI_II00543	Phage terminase, large subunit, PBSX family	NA
UHGV-0166174_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166174_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0166174_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0166174_26	UniRef90	UniRef90_W0U901	Phage portal protein	NA
UHGV-0166174_26	eggNOG-mapper	1160721.RBI_II00542	NA	NA
UHGV-0166174_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0166174_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0166174_27	UniRef90	UniRef90_W0U9J3	Phage minor capsid protein (Glycoside Hydrolase Family 25 protein )	NA
UHGV-0166174_27	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0166174_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0166174_27	COG	COG2369	NA	NA
UHGV-0166174_27	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0166174_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0166174_30	UniRef90	UniRef90_W0U9H1	Phage minor structural protein	NA
UHGV-0166174_30	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0166174_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0166174_30	Structural annotation	PF06810	NA	NA
UHGV-0166174_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0166174_31	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0166174_31	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0166174_31	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0166174_32	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0166174_32	UniRef90	UniRef90_W0U8Z9	Rho_N domain-containing protein	NA
UHGV-0166174_32	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0166174_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0166174_33	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0166174_34	Pfam	PF20536	NA	DUF6751
UHGV-0166174_34	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0166174_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0166174_35	UniRef90	UniRef90_UPI000F52DD2A	minor capsid protein	NA
UHGV-0166174_35	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-0166174_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0166174_35	Structural annotation	PF11114	NA	NA
UHGV-0166174_36	PHROG	phrog_3266	tail completion	connector
UHGV-0166174_36	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-0166174_36	Structural annotation	PF20765	NA	NA
UHGV-0166174_37	PHROG	phrog_3099	NA	unknown function
UHGV-0166174_37	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0166174_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0166174_38	PHROG	phrog_11299	NA	unknown function
UHGV-0166174_38	eggNOG-mapper	1160721.RBI_II00531	NA	NA
UHGV-0166174_38	Structural annotation	PF20378	NA	NA
UHGV-0166174_39	PHROG	phrog_706	NA	unknown function
UHGV-0166174_39	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0166174_39	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0166174_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0166174_39	Structural annotation	PF06854	NA	NA
UHGV-0166174_40	PHROG	phrog_2546	NA	unknown function
UHGV-0166174_40	UniRef90	UniRef90_A0A356CXM2	zinc_ribbon_2 domain-containing protein	NA
UHGV-0166174_40	eggNOG-mapper	1160721.RBI_II00529	PFAM Tellurite resistance protein TerB	NA
UHGV-0166174_40	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0166174_40	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0166174_40	Structural annotation	PF13240	NA	NA
UHGV-0166174_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0166174_41	UniRef90	UniRef90_W0U887	Putative minor tail protein	NA
UHGV-0166174_41	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0166174_41	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0166174_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0166174_42	PHROG	phrog_1194	NA	unknown function
UHGV-0166174_42	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0166174_42	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0166174_43	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0166174_43	Structural annotation	PF09931	NA	NA