UHGV-0166269

Genome information

Genome length 22,721 bps

CDS count 29

Completeness 63.24% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166269
vOTU ID	vOTU-028283
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_512138
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.34
Jumbo phage	No

Genome content
Genome length	22,721 bps
GC content	59.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	96.47%
Average CDS length	758.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166269_2	PHROG	phrog_26310	NA	unknown function
UHGV-0166269_2	eggNOG-mapper	1120980.JQKH01000028_gene1713	NA	NA
UHGV-0166269_4	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0166269_4	UniRef90	UniRef90_A0A1H4JCI1	ParB-like nuclease domain-containing protein	NA
UHGV-0166269_4	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0166269_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0166269_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0166269_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0166269_4	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0166269_5	PHROG	phrog_13321	NA	unknown function
UHGV-0166269_5	UniRef90	UniRef90_A0A412NGG9	Radical SAM protein	NA
UHGV-0166269_5	eggNOG-mapper	748224.HMPREF9436_03343	DNA photolyase activity	NA
UHGV-0166269_5	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0166269_5	COG	COG1533	DNA repair photolyase	NA
UHGV-0166269_5	Structural annotation	PF20903, MF_01864, NF033668, COG2100	NA	NA
UHGV-0166269_6	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0166269_6	UniRef90	UniRef90_A0A7X5IF66	XRE family transcriptional regulator	NA
UHGV-0166269_6	eggNOG-mapper	661087.HMPREF1008_00898	NA	NA
UHGV-0166269_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166269_7	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0166269_7	UniRef90	UniRef90_A0A1Q6E4H5	Terminase	NA
UHGV-0166269_7	eggNOG-mapper	661087.HMPREF1008_00897	Phage terminase, large subunit, PBSX family	NA
UHGV-0166269_7	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0166269_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166269_7	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0166269_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0166269_8	UniRef90	UniRef90_A0A425VUN7	Phage portal protein	NA
UHGV-0166269_8	eggNOG-mapper	469378.Ccur_02800	phage minor capsid protein	NA
UHGV-0166269_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0166269_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0166269_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0166269_9	UniRef90	UniRef90_A0A1H8UFB1	Toxin 50 (Fragment)	NA
UHGV-0166269_9	eggNOG-mapper	469378.Ccur_02790	Phage minor capsid protein 2	NA
UHGV-0166269_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0166269_9	COG	COG2369	NA	NA
UHGV-0166269_9	Structural annotation	PF06152	NA	NA
UHGV-0166269_10	PHROG	phrog_34144	NA	unknown function
UHGV-0166269_10	eggNOG-mapper	938288.HG326225_gene1282	NA	NA
UHGV-0166269_11	PHROG	phrog_3675	NA	unknown function
UHGV-0166269_11	UniRef90	UniRef90_UPI001C937EEC	YjcQ family protein	NA
UHGV-0166269_11	eggNOG-mapper	469378.Ccur_02770	YjcQ protein	NA
UHGV-0166269_11	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0166269_11	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0166269_12	PHROG	phrog_824	NA	unknown function
UHGV-0166269_12	UniRef90	UniRef90_A0A1H8UNP5	VRR-NUC domain-containing protein	NA
UHGV-0166269_12	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0166269_12	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0166269_12	Structural annotation	PF08774	NA	NA
UHGV-0166269_13	PHROG	phrog_31118	NA	unknown function
UHGV-0166269_13	UniRef90	UniRef90_UPI001F255CDA	coiled-coil domain-containing protein	NA
UHGV-0166269_13	eggNOG-mapper	445975.COLSTE_01111	NA	NA
UHGV-0166269_13	Structural annotation	PF06810	NA	NA
UHGV-0166269_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0166269_14	UniRef90	UniRef90_H3SAB1	Phage major capsid protein	NA
UHGV-0166269_14	eggNOG-mapper	1111121.HMPREF1247_0844	NA	NA
UHGV-0166269_15	eggNOG-mapper	445975.COLSTE_01109	NA	NA
UHGV-0166269_16	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0166269_16	UniRef90	UniRef90_A0A7K3XYU9	Minor capsid protein	NA
UHGV-0166269_16	eggNOG-mapper	479437.Elen_2630	Minor capsid protein	NA
UHGV-0166269_16	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0166269_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0166269_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0166269_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0166269_17	Structural annotation	PF11114	NA	NA
UHGV-0166269_18	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0166269_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0166269_19	PHROG	phrog_820	major tail protein	tail
UHGV-0166269_19	UniRef90	UniRef90_UPI0013725777	Ig-like domain-containing protein	NA
UHGV-0166269_19	eggNOG-mapper	469378.Ccur_02690	Bacterial Ig-like domain (group 2)	NA
UHGV-0166269_19	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0166269_19	COG	COG5492	NA	NA
UHGV-0166269_19	Structural annotation	PF06199, PF02368, TIGR02126, COG5437	NA	NA
UHGV-0166269_21	PHROG	phrog_706	NA	unknown function
UHGV-0166269_21	eggNOG-mapper	469378.Ccur_02670	Bacteriophage Gp15 protein	NA
UHGV-0166269_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0166269_22	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0166269_22	UniRef90	UniRef90_N9V933	PhageMin_Tail domain-containing protein	NA
UHGV-0166269_22	eggNOG-mapper	445975.COLSTE_01102	Phage-related minor tail protein	NA
UHGV-0166269_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0166269_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0166269_23	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0166269_23	UniRef90	UniRef90_A0A5K1IKC8	Phage tail family protein	NA
UHGV-0166269_23	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0166269_23	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0166269_23	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0166269_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-0166269_23	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0166269_24	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0166269_24	UniRef90	UniRef90_A0A3E4QNB4	Prophage_tail domain-containing protein	NA
UHGV-0166269_24	eggNOG-mapper	479437.Elen_2638	Prophage endopeptidase tail	NA
UHGV-0166269_24	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0166269_24	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0166269_24	COG	COG4926	Phage-related protein	NA
UHGV-0166269_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0166269_26	PHROG	phrog_3639	minor tail protein	tail
UHGV-0166269_26	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-0166269_26	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0166269_29	KOfam	K14059	int; integrase	NA
UHGV-0166269_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0166269_29	UniRef90	UniRef90_UPI001E41DEB0	site-specific integrase	NA
UHGV-0166269_29	eggNOG-mapper	1504822.CCNO01000016_gene275	DNA integration	NA
UHGV-0166269_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0166269_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0166269_29	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA