UHGV-0166339

Genome information

Genome length 29,707 bps

CDS count 44

Completeness 74.22% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166339
vOTU ID	vOTU-015070
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_509450
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.86
Jumbo phage	No

Genome content
Genome length	29,707 bps
GC content	41.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.25%
Average CDS length	633.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166339_1	PHROG	phrog_20532	NA	unknown function
UHGV-0166339_1	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0166339_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0166339_3	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0166339_3	UniRef90	UniRef90_UPI001D07E623	siphovirus Gp157 family protein	NA
UHGV-0166339_3	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0166339_3	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0166339_3	Structural annotation	PF05565	NA	NA
UHGV-0166339_4	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0166339_4	UniRef90	UniRef90_UPI000C06E88C	AAA family ATPase	NA
UHGV-0166339_4	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0166339_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0166339_4	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0166339_5	PHROG	phrog_18107	NA	unknown function
UHGV-0166339_5	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0166339_5	eggNOG-mapper	476272.RUMHYD_01739	NA	NA
UHGV-0166339_5	Structural annotation	PF05037	NA	NA
UHGV-0166339_6	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0166339_6	UniRef90	UniRef90_A0A1C6ER71	Superfamily II helicase and inactivated derivatives	NA
UHGV-0166339_6	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0166339_6	Pfam	PF06048	NA	DUF927
UHGV-0166339_6	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0166339_6	COG	COG5519	NA	NA
UHGV-0166339_6	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0166339_8	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0166339_8	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0166339_8	UniRef90	UniRef90_R7GSU9	DNA or RNA helicases of superfamily II	NA
UHGV-0166339_8	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0166339_8	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0166339_8	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0166339_8	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0166339_8	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0166339_8	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0166339_9	PHROG	phrog_824	NA	unknown function
UHGV-0166339_9	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0166339_9	eggNOG-mapper	768710.DesyoDRAFT_5233	VRR-NUC domain	NA
UHGV-0166339_9	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0166339_9	Structural annotation	PF08774	NA	NA
UHGV-0166339_11	PHROG	phrog_2600	NA	unknown function
UHGV-0166339_11	eggNOG-mapper	1415774.U728_3767	NA	NA
UHGV-0166339_13	PHROG	phrog_8684	NA	unknown function
UHGV-0166339_13	UniRef90	UniRef90_A0A098AYS8	YopX domain-containing protein	NA
UHGV-0166339_13	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0166339_13	Pfam	PF09643	YopX protein	YopX
UHGV-0166339_13	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0166339_13	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0166339_16	PHROG	phrog_10714	NA	unknown function
UHGV-0166339_16	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0166339_21	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0166339_21	Structural annotation	PF02996	NA	NA
UHGV-0166339_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0166339_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0166339_22	UniRef90	UniRef90_A0A315Y306	Phage terminase small subunit	NA
UHGV-0166339_22	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0166339_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0166339_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0166339_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166339_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0166339_23	UniRef90	UniRef90_UPI000E5CEDAF	PBSX family phage terminase large subunit	NA
UHGV-0166339_23	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0166339_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0166339_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0166339_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0166339_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166339_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0166339_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0166339_24	UniRef90	UniRef90_A0A1C6E8J3	Phage portal protein, SPP1 family	NA
UHGV-0166339_24	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0166339_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0166339_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0166339_25	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0166339_25	UniRef90	UniRef90_A0A1C6E9M3	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0166339_25	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0166339_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0166339_25	COG	COG2369	NA	NA
UHGV-0166339_25	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0166339_26	UniRef90	UniRef90_U2KD48	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0166339_28	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0166339_28	UniRef90	UniRef90_UPI0011C84F57	Rha family transcriptional regulator	NA
UHGV-0166339_28	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0166339_28	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0166339_28	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0166339_28	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0166339_28	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0166339_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0166339_29	UniRef90	UniRef90_A0A1C6E8W4	Phage minor structural protein GP20	NA
UHGV-0166339_29	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0166339_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0166339_29	Structural annotation	PF06810	NA	NA
UHGV-0166339_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0166339_30	UniRef90	UniRef90_UPI001C0F52E5	N4-gp56 family major capsid protein	NA
UHGV-0166339_30	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0166339_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0166339_30	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0166339_31	PHROG	phrog_1236	head protein	head and packaging
UHGV-0166339_31	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0166339_31	Structural annotation	PF05135	NA	NA
UHGV-0166339_32	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0166339_32	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0166339_32	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0166339_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0166339_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0166339_33	UniRef90	UniRef90_UPI001379FEE4	HK97 gp10 family phage protein	NA
UHGV-0166339_33	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0166339_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0166339_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0166339_34	PHROG	phrog_957	head protein	head and packaging
UHGV-0166339_34	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0166339_34	Structural annotation	PF12691	NA	NA
UHGV-0166339_35	PHROG	phrog_885	major tail protein	tail
UHGV-0166339_35	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0166339_35	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0166339_36	PHROG	phrog_1021	NA	unknown function
UHGV-0166339_36	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0166339_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0166339_38	UniRef90	UniRef90_A0A1C6E9A4	Phage-related minor tail protein	NA
UHGV-0166339_38	eggNOG-mapper	1123405.AUMM01000039_gene141	minor tail protein	NA
UHGV-0166339_38	COG	COG5412	Phage-related protein	NA
UHGV-0166339_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0166339_39	UniRef90	UniRef90_A0A110A7B6	Phage tail protein	NA
UHGV-0166339_39	eggNOG-mapper	1031288.AXAA01000063_gene2149	tail component	NA
UHGV-0166339_39	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0166339_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0166339_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0166339_40	UniRef90	UniRef90_UPI0011C788B1	phage tail protein	NA
UHGV-0166339_40	eggNOG-mapper	1540257.JQMW01000009_gene3384	Phage minor structural protein	NA
UHGV-0166339_40	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0166339_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0166339_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0166339_40	COG	COG4926	Phage-related protein	NA
UHGV-0166339_41	PHROG	phrog_34633	NA	unknown function
UHGV-0166339_41	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0166339_42	PHROG	phrog_8309	NA	unknown function
UHGV-0166339_42	eggNOG-mapper	1121871.AUAT01000030_gene1041	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0166339_42	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0166339_43	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0166339_44	PHROG	phrog_199	holin	lysis
UHGV-0166339_44	UniRef90	UniRef90_A0A7X8C3V8	Phage holin family protein	NA
UHGV-0166339_44	eggNOG-mapper	877411.JMMA01000002_gene949	Bacteriophage holin family	NA
UHGV-0166339_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0166339_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0166339_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0166339_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA