UHGV-0166379

Genome information

Genome length 29,398 bps

CDS count 42

Completeness 65.93% (medium-quality)

geNomad score 0.9664

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166379
vOTU ID	vOTU-028289
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_552653
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9664
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.22
Jumbo phage	No

Genome content
Genome length	29,398 bps
GC content	41.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	95.00%
Average CDS length	668.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166379_4	PHROG	phrog_310	transposase	integration and excision
UHGV-0166379_4	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-0166379_4	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0166379_4	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0166379_4	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0166379_4	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0166379_4	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0166379_4	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0166379_5	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0166379_5	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0166379_5	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-0166379_5	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0166379_5	Pfam	PF13401	AAA domain	AAA_22
UHGV-0166379_5	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0166379_5	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0166379_7	PHROG	phrog_5671	NA	unknown function
UHGV-0166379_7	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0166379_9	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0166379_9	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0166379_9	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0166379_9	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-0166379_9	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0166379_9	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0166379_9	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0166379_10	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-0166379_11	PHROG	phrog_286	NA	unknown function
UHGV-0166379_11	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0166379_11	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-0166379_11	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0166379_11	Structural annotation	PF06252	NA	NA
UHGV-0166379_12	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-0166379_12	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0166379_12	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0166379_12	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0166379_12	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0166379_12	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0166379_13	eggNOG-mapper	663278.Ethha_0085	NA	NA
UHGV-0166379_14	PHROG	phrog_25462	NA	unknown function
UHGV-0166379_14	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0166379_14	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0166379_14	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0166379_15	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0166379_15	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0166379_15	eggNOG-mapper	742733.HMPREF9469_02884	NA	NA
UHGV-0166379_15	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0166379_15	Structural annotation	PF11985	NA	NA
UHGV-0166379_16	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0166379_16	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0166379_16	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0166379_16	eggNOG-mapper	1304880.JAGB01000001_gene953	antitermination protein NusG	NA
UHGV-0166379_16	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0166379_16	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0166379_16	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0166379_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166379_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0166379_18	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0166379_18	eggNOG-mapper	1105031.HMPREF1141_0088	phage terminase, large subunit, PBSX family	NA
UHGV-0166379_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0166379_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0166379_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166379_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0166379_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0166379_19	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0166379_19	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0166379_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0166379_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0166379_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0166379_20	UniRef90	UniRef90_A0A1C6IA10	Phage minor capsid protein 2	NA
UHGV-0166379_20	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0166379_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0166379_20	COG	COG2369	NA	NA
UHGV-0166379_20	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0166379_21	eggNOG-mapper	663278.Ethha_0498	NA	NA
UHGV-0166379_22	PHROG	phrog_419	NA	unknown function
UHGV-0166379_22	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0166379_22	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0166379_22	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0166379_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0166379_23	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0166379_23	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0166379_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0166379_23	Structural annotation	PF06810	NA	NA
UHGV-0166379_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-0166379_24	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0166379_24	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0166379_24	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0166379_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0166379_25	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0166379_26	PHROG	phrog_3366	NA	unknown function
UHGV-0166379_26	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0166379_26	Pfam	PF20536	NA	DUF6751
UHGV-0166379_26	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0166379_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0166379_27	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0166379_27	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0166379_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0166379_27	Structural annotation	PF11114	NA	NA
UHGV-0166379_28	PHROG	phrog_3266	tail completion	connector
UHGV-0166379_28	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0166379_28	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0166379_28	Structural annotation	PF12691	NA	NA
UHGV-0166379_29	PHROG	phrog_3099	NA	unknown function
UHGV-0166379_29	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0166379_29	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0166379_29	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0166379_30	PHROG	phrog_4450	NA	unknown function
UHGV-0166379_30	UniRef90	UniRef90_A0A373KZ30	AP endonuclease	NA
UHGV-0166379_30	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0166379_30	Pfam	PF20378	NA	DUF6673
UHGV-0166379_30	Structural annotation	PF20378	NA	NA
UHGV-0166379_31	PHROG	phrog_706	NA	unknown function
UHGV-0166379_31	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0166379_31	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0166379_31	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0166379_31	Structural annotation	PF06854	NA	NA
UHGV-0166379_32	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0166379_33	PHROG	phrog_19074	NA	unknown function
UHGV-0166379_33	UniRef90	UniRef90_A0A413QHE6	Phage tail tape measure protein	NA
UHGV-0166379_33	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0166379_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0166379_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0166379_33	COG	COG5283	Phage-related tail protein	NA
UHGV-0166379_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0166379_34	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0166379_34	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0166379_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0166379_34	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0166379_35	PHROG	phrog_18110	NA	unknown function
UHGV-0166379_35	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0166379_35	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0166379_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0166379_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0166379_35	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0166379_35	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0166379_37	PHROG	phrog_11105	NA	unknown function
UHGV-0166379_38	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0166379_38	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0166379_39	PHROG	phrog_4105	NA	unknown function
UHGV-0166379_39	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0166379_40	PHROG	phrog_443	holin	lysis
UHGV-0166379_40	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0166379_40	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0166379_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0166379_40	Structural annotation	PF16945	NA	NA
UHGV-0166379_41	PHROG	phrog_918	NA	unknown function
UHGV-0166379_41	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0166379_41	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0166379_41	Pfam	PF19791	NA	DUF6275
UHGV-0166379_41	Structural annotation	PF19791	NA	NA
UHGV-0166379_42	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0166379_42	PHROG	phrog_20388	endolysin	lysis
UHGV-0166379_42	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0166379_42	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0166379_42	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0166379_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0166379_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0166379_42	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA