UHGV-0166513

Genome information

Genome length 28,950 bps

CDS count 50

Completeness 73.99% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166513
vOTU ID	vOTU-028294
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_550287
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.4
Jumbo phage	No

Genome content
Genome length	28,950 bps
GC content	41.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.18%
Average CDS length	530.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166513_1	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0166513_1	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0166513_1	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0166513_1	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0166513_3	UniRef90	UniRef90_UPI001C02123C	NA	NA
UHGV-0166513_3	eggNOG-mapper	411483.FAEPRAA2165_02183	NA	NA
UHGV-0166513_3	Pfam	PF07866	NA	DUF1653
UHGV-0166513_3	COG	COG4728	NA	NA
UHGV-0166513_3	Structural annotation	PF07866, TIGR02450, COG4728	NA	NA
UHGV-0166513_6	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0166513_6	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0166513_7	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0166513_7	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0166513_7	UniRef90	UniRef90_D4MVN1	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0166513_7	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0166513_7	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0166513_7	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0166513_7	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0166513_7	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0166513_9	PHROG	phrog_1455	NA	unknown function
UHGV-0166513_9	eggNOG-mapper	1567013.A0A0A7RTM3_9CAUD	NA	NA
UHGV-0166513_9	Pfam	PF21793	NA	DUF6877
UHGV-0166513_9	Structural annotation	PF21793	NA	NA
UHGV-0166513_13	UniRef90	UniRef90_A0A415UCM6	NA	NA
UHGV-0166513_13	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0166513_13	Pfam	PF04448	NA	DUF551
UHGV-0166513_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0166513_16	UniRef90	UniRef90_UPI001ADD7D79	NA	NA
UHGV-0166513_16	eggNOG-mapper	342113.DM82_1124	NA	NA
UHGV-0166513_16	Pfam	PF06356	NA	DUF1064
UHGV-0166513_16	Structural annotation	PF06356	NA	NA
UHGV-0166513_17	PHROG	phrog_7566	NA	unknown function
UHGV-0166513_17	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0166513_17	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0166513_18	PHROG	phrog_5070	NA	unknown function
UHGV-0166513_18	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0166513_18	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0166513_18	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0166513_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0166513_19	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0166513_19	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0166513_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0166513_20	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0166513_20	UniRef90	UniRef90_UPI001ADDDE31	ERF family protein	NA
UHGV-0166513_20	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0166513_20	Pfam	PF04404	ERF superfamily	ERF
UHGV-0166513_20	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0166513_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0166513_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0166513_23	PHROG	phrog_9804	NA	unknown function
UHGV-0166513_23	UniRef90	UniRef90_A0A285PUF9	Loader and inhibitor of phage G40P	NA
UHGV-0166513_23	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0166513_23	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0166513_23	Structural annotation	PF11417	NA	NA
UHGV-0166513_24	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0166513_24	UniRef90	UniRef90_A0A285PT73	Helix-turn-helix domain	NA
UHGV-0166513_24	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0166513_24	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0166513_24	Structural annotation	PF05584, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0166513_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0166513_26	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0166513_26	UniRef90	UniRef90_UPI001ADD788B	phage antirepressor KilAC domain-containing protein	NA
UHGV-0166513_26	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0166513_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0166513_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0166513_26	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0166513_26	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0166513_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0166513_29	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0166513_29	UniRef90	UniRef90_A0A1C6HZ25	Antitoxin PezA	NA
UHGV-0166513_29	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0166513_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166513_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166513_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0166513_31	PHROG	phrog_806	NA	unknown function
UHGV-0166513_31	UniRef90	UniRef90_A0A285PTA3	NA	NA
UHGV-0166513_31	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0166513_31	Pfam	PF11611	NA	DUF4352
UHGV-0166513_31	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0166513_34	UniRef90	UniRef90_A0A285PUG9	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0166513_34	eggNOG-mapper	1235790.C805_02349	Transcriptional regulator	NA
UHGV-0166513_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0166513_34	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0166513_34	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0166513_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0166513_35	PHROG	phrog_95	integrase	integration and excision
UHGV-0166513_35	UniRef90	UniRef90_A0A285PUJ0	Resolvase, N terminal domain	NA
UHGV-0166513_35	eggNOG-mapper	1235792.C808_00048	Resolvase, N terminal domain	NA
UHGV-0166513_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0166513_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0166513_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0166513_35	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0166513_36	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0166513_37	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0166513_37	Structural annotation	PF12510	NA	NA
UHGV-0166513_38	PHROG	phrog_20016	NA	unknown function
UHGV-0166513_38	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0166513_38	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0166513_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0166513_39	PHROG	phrog_16490	NA	unknown function
UHGV-0166513_39	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0166513_40	PHROG	phrog_21718	NA	unknown function
UHGV-0166513_40	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0166513_40	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0166513_41	PHROG	phrog_3754	NA	unknown function
UHGV-0166513_41	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0166513_42	UniRef90	UniRef90_A0A285PXT6	Winged helix-turn-helix DNA-binding domain	NA
UHGV-0166513_43	PHROG	phrog_199	holin	lysis
UHGV-0166513_43	UniRef90	UniRef90_A0A285PUE3	Bacteriophage holin family	NA
UHGV-0166513_43	eggNOG-mapper	394503.Ccel_2943	toxin secretion phage lysis holin	NA
UHGV-0166513_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0166513_43	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0166513_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0166513_44	eggNOG-mapper	398512.JQKC01000010_gene144	NA	NA
UHGV-0166513_47	eggNOG-mapper	1042156.CXIVA_07180	NA	NA
UHGV-0166513_47	Structural annotation	PF01176, MF_00085, NF003076, COG0231	NA	NA
UHGV-0166513_48	PHROG	phrog_1887	tail protein	tail
UHGV-0166513_48	eggNOG-mapper	1392487.JIAD01000001_gene511	NA	NA
UHGV-0166513_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0166513_49	UniRef90	UniRef90_A0A285PT43	Fibronectin type III	NA
UHGV-0166513_49	eggNOG-mapper	1410624.JNKK01000045_gene550	Fibronectin type 3 domain	NA
UHGV-0166513_49	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0166513_49	Structural annotation	PF02010, PF06995, PF16794, PF16303, PF19271, MF_04116, NF010681, TIGR02126, COG3499, COG3401	NA	NA
UHGV-0166513_50	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0166513_50	UniRef90	UniRef90_A0A285PTB9	Phage tail tape measure protein	NA
UHGV-0166513_50	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0166513_50	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0166513_50	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0166513_50	COG	COG5283	Phage-related tail protein	NA
UHGV-0166513_50	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA