UHGV-0166558

Genome information

Genome length 33,717 bps

CDS count 57

Completeness 83.31% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166558
vOTU ID	vOTU-022334
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539970
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.6
Jumbo phage	No

Genome content
Genome length	33,717 bps
GC content	40.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.73%
Average CDS length	546.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166558_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0166558_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0166558_1	UniRef90	UniRef90_UPI000AAC498A	helix-turn-helix domain-containing protein	NA
UHGV-0166558_1	eggNOG-mapper	756499.Desde_1040	PFAM helix-turn-helix	NA
UHGV-0166558_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0166558_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166558_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166558_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0166558_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0166558_2	UniRef90	UniRef90_A0A898FLL4	Helix-turn-helix domain-containing protein	NA
UHGV-0166558_2	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0166558_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166558_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0166558_3	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0166558_3	UniRef90	UniRef90_A0A898FM22	ORF6N domain-containing protein	NA
UHGV-0166558_3	eggNOG-mapper	552396.HMPREF0863_00753	AntA/AntB antirepressor	NA
UHGV-0166558_3	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0166558_3	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0166558_3	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0166558_4	UniRef90	UniRef90_A0A898FN54	NA	NA
UHGV-0166558_4	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0166558_4	Pfam	PF05339	NA	DUF739
UHGV-0166558_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0166558_4	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0166558_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0166558_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0166558_5	UniRef90	UniRef90_H1BHQ3	HTH cro/C1-type domain-containing protein	NA
UHGV-0166558_5	eggNOG-mapper	864563.HMPREF9166_1835	Helix-turn-helix XRE-family like proteins	NA
UHGV-0166558_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166558_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166558_6	UniRef90	UniRef90_F2JK84	Helix-turn-helix domain protein	NA
UHGV-0166558_6	eggNOG-mapper	642492.Clole_2800	NA	NA
UHGV-0166558_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0166558_7	PHROG	phrog_9976	anti-repressor	transcription regulation
UHGV-0166558_7	UniRef90	UniRef90_R6UYN4	Bro-N domain-containing protein	NA
UHGV-0166558_7	eggNOG-mapper	1449050.JNLE01000005_gene3959	BRO family, N-terminal domain	NA
UHGV-0166558_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0166558_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0166558_8	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-0166558_8	UniRef90	UniRef90_R6URP2	P22_AR_N domain-containing protein	NA
UHGV-0166558_8	eggNOG-mapper	742735.HMPREF9467_00787	P22_AR N-terminal domain	NA
UHGV-0166558_8	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0166558_8	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-0166558_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0166558_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0166558_9	UniRef90	UniRef90_UPI000E49576D	phage antirepressor KilAC domain-containing protein	NA
UHGV-0166558_9	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-0166558_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0166558_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0166558_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0166558_9	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0166558_10	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0166558_10	UniRef90	UniRef90_R6VYG9	Bro-N domain-containing protein	NA
UHGV-0166558_10	eggNOG-mapper	999413.HMPREF1094_02023	ORF6C domain	NA
UHGV-0166558_10	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0166558_10	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0166558_10	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0166558_10	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0166558_13	eggNOG-mapper	1235793.C809_00543	NA	NA
UHGV-0166558_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166558_19	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0166558_19	UniRef90	UniRef90_H1BHR9	Putative phage replisome organizer	NA
UHGV-0166558_19	eggNOG-mapper	558169.AGAV01000001_gene3326	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0166558_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0166558_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0166558_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0166558_19	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0166558_20	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0166558_20	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0166558_21	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0166558_21	UniRef90	UniRef90_H1BHS1	Inhibitor_G39P domain-containing protein	NA
UHGV-0166558_21	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0166558_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0166558_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0166558_22	UniRef90	UniRef90_H1B475	SF4 helicase domain-containing protein	NA
UHGV-0166558_22	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0166558_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0166558_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-0166558_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0166558_24	PHROG	phrog_17842	NA	unknown function
UHGV-0166558_26	eggNOG-mapper	428127.EUBDOL_01518	NA	NA
UHGV-0166558_29	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0166558_33	PHROG	phrog_1233	NA	unknown function
UHGV-0166558_33	eggNOG-mapper	1232449.BAHV02000018_gene1535	NA	NA
UHGV-0166558_34	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0166558_34	UniRef90	UniRef90_UPI001E54D90B	phage terminase small subunit	NA
UHGV-0166558_34	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0166558_34	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0166558_34	COG	COG5484	NA	NA
UHGV-0166558_34	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0166558_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166558_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0166558_35	UniRef90	UniRef90_U5FBJ7	PBSX family phage terminase, large subunit	NA
UHGV-0166558_35	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0166558_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0166558_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166558_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0166558_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0166558_36	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-0166558_36	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0166558_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0166558_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0166558_37	UniRef90	UniRef90_UPI001D07CE98	phage minor capsid protein	NA
UHGV-0166558_37	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-0166558_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0166558_37	COG	COG2369	NA	NA
UHGV-0166558_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0166558_39	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-0166558_39	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0166558_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0166558_39	Structural annotation	PF06810	NA	NA
UHGV-0166558_40	PHROG	phrog_212	major head protein	head and packaging
UHGV-0166558_40	UniRef90	UniRef90_UPI001E4A818F	phage capsid protein	NA
UHGV-0166558_40	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0166558_40	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0166558_42	KOfam	K19507	gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-]	NA
UHGV-0166558_42	UniRef90	UniRef90_UPI001BA5D64C	putative minor capsid protein	NA
UHGV-0166558_42	Structural annotation	PF20536	NA	NA
UHGV-0166558_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0166558_43	UniRef90	UniRef90_UPI0014302C23	minor capsid protein	NA
UHGV-0166558_43	eggNOG-mapper	552396.HMPREF0863_00274	Minor capsid protein	NA
UHGV-0166558_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0166558_43	Structural annotation	PF11114	NA	NA
UHGV-0166558_44	Structural annotation	PF16807	NA	NA
UHGV-0166558_45	PHROG	phrog_3099	NA	unknown function
UHGV-0166558_45	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0166558_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0166558_47	PHROG	phrog_706	NA	unknown function
UHGV-0166558_47	UniRef90	UniRef90_UPI0014384D64	Gp15 family bacteriophage protein	NA
UHGV-0166558_47	eggNOG-mapper	552396.HMPREF0863_00270	Bacteriophage Gp15 protein	NA
UHGV-0166558_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0166558_47	Structural annotation	PF06854	NA	NA
UHGV-0166558_48	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0166558_48	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0166558_48	UniRef90	UniRef90_A0A3E2VT84	Phage tail tape measure protein	NA
UHGV-0166558_48	eggNOG-mapper	552396.HMPREF0863_00269	Phage tail tape measure protein, TP901 family	NA
UHGV-0166558_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0166558_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0166558_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0166558_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0166558_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0166558_49	UniRef90	UniRef90_A0A1T4XKQ1	Phage-related protein	NA
UHGV-0166558_49	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0166558_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0166558_49	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0166558_50	PHROG	phrog_18110	NA	unknown function
UHGV-0166558_50	UniRef90	UniRef90_H1BAL5	Phage minor structural protein	NA
UHGV-0166558_50	eggNOG-mapper	908340.HMPREF9406_0815	NA	NA
UHGV-0166558_50	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0166558_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0166558_50	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0166558_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0166558_50	COG	COG4926	Phage-related protein	NA
UHGV-0166558_50	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0166558_52	PHROG	phrog_38417	hyaluronidase	other
UHGV-0166558_53	eggNOG-mapper	908340.HMPREF9406_0812	NA	NA
UHGV-0166558_54	Structural annotation	NF040910	NA	NA
UHGV-0166558_55	PHROG	phrog_443	holin	lysis
UHGV-0166558_55	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0166558_55	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0166558_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0166558_55	Structural annotation	PF16945	NA	NA
UHGV-0166558_56	PHROG	phrog_4105	NA	unknown function
UHGV-0166558_56	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0166558_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0166558_57	PHROG	phrog_2742	endolysin	lysis
UHGV-0166558_57	UniRef90	UniRef90_UPI001E43C2E1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0166558_57	eggNOG-mapper	908340.HMPREF9406_0809	pathogenesis	NA
UHGV-0166558_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0166558_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA