UHGV-0166559

Genome information

Genome length 37,442 bps

CDS count 61

Completeness 93.06% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166559
vOTU ID	vOTU-072599
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_539969
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.68
Jumbo phage	No

Genome content
Genome length	37,442 bps
GC content	38.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.08%
Average CDS length	549.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166559_1	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0166559_1	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166559_1	UniRef90	UniRef90_UPI0019D22EF5	type I restriction endonuclease	NA
UHGV-0166559_1	eggNOG-mapper	936375.HMPREF1152_0653	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0166559_1	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0166559_1	COG	COG4748	NA	NA
UHGV-0166559_1	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0166559_2	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0166559_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0166559_4	PHROG	phrog_372	tail protein	tail
UHGV-0166559_4	UniRef90	UniRef90_UPI001EE154D9	NA	NA
UHGV-0166559_4	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0166559_4	Pfam	PF05895	NA	DUF859
UHGV-0166559_4	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG5608	NA	NA
UHGV-0166559_5	PHROG	phrog_3558	tail protein	tail
UHGV-0166559_5	UniRef90	UniRef90_UPI0013888ACB	phage tail protein	NA
UHGV-0166559_5	eggNOG-mapper	764299.STRIC_2436	Prophage endopeptidase tail	NA
UHGV-0166559_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0166559_5	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0166559_5	COG	COG4926	Phage-related protein	NA
UHGV-0166559_6	UniRef90	UniRef90_A0A1I1X308	Phage tail protein	NA
UHGV-0166559_6	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0166559_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0166559_6	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0166559_7	PHROG	phrog_17020	NA	unknown function
UHGV-0166559_7	UniRef90	UniRef90_A0A1C6JI42	Phage-related protein	NA
UHGV-0166559_7	eggNOG-mapper	1260356.D920_00138	Multisubunit Na H antiporter MnhC subunit	NA
UHGV-0166559_7	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0166559_8	PHROG	phrog_23464	NA	unknown function
UHGV-0166559_8	eggNOG-mapper	1118055.CAGU01000013_gene768	Phage-related minor tail protein	NA
UHGV-0166559_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0166559_10	PHROG	phrog_1021	NA	unknown function
UHGV-0166559_10	eggNOG-mapper	1123309.AQYB01000018_gene817	NA	NA
UHGV-0166559_12	PHROG	phrog_885	major tail protein	tail
UHGV-0166559_12	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-0166559_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0166559_13	PHROG	phrog_957	head protein	head and packaging
UHGV-0166559_13	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0166559_13	Structural annotation	PF12691	NA	NA
UHGV-0166559_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0166559_14	UniRef90	UniRef90_UPI001379FEE4	HK97 gp10 family phage protein	NA
UHGV-0166559_14	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0166559_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0166559_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0166559_15	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0166559_15	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-0166559_15	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0166559_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0166559_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0166559_16	PHROG	phrog_1236	head protein	head and packaging
UHGV-0166559_16	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0166559_16	Structural annotation	PF05135	NA	NA
UHGV-0166559_17	PHROG	phrog_10541	NA	unknown function
UHGV-0166559_17	eggNOG-mapper	1262449.CP6013_3200	NA	NA
UHGV-0166559_17	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0166559_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-0166559_18	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-0166559_18	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0166559_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0166559_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0166559_19	UniRef90	UniRef90_UPI00137B133A	phage scaffolding protein	NA
UHGV-0166559_19	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0166559_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0166559_19	Structural annotation	PF06810	NA	NA
UHGV-0166559_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0166559_20	PHROG	phrog_435	endolysin	lysis
UHGV-0166559_20	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0166559_20	eggNOG-mapper	1084719.G3MB92_9CAUD	amidase activity	NA
UHGV-0166559_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0166559_20	Pfam	PF01476	LysM domain	LysM
UHGV-0166559_21	PHROG	phrog_443	holin	lysis
UHGV-0166559_21	UniRef90	UniRef90_A0A542ZAT8	R1t family holin	NA
UHGV-0166559_21	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-0166559_21	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0166559_21	Structural annotation	PF16945	NA	NA
UHGV-0166559_22	PHROG	phrog_3675	NA	unknown function
UHGV-0166559_22	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0166559_22	eggNOG-mapper	1321784.HMPREF1987_01070	YjcQ protein	NA
UHGV-0166559_22	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0166559_22	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0166559_23	PHROG	phrog_34144	NA	unknown function
UHGV-0166559_23	eggNOG-mapper	936596.HMPREF1495_0343	NA	NA
UHGV-0166559_23	Structural annotation	PF20111	NA	NA
UHGV-0166559_24	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0166559_24	UniRef90	UniRef90_R6DQ35	Phage protein F-like protein	NA
UHGV-0166559_24	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0166559_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0166559_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0166559_24	COG	COG2369	NA	NA
UHGV-0166559_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0166559_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166559_25	UniRef90	UniRef90_L0P6F5	HNH endonuclease	NA
UHGV-0166559_25	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0166559_25	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0166559_25	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0166559_25	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0166559_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0166559_26	UniRef90	UniRef90_A0A6N7X7T0	Phage portal protein	NA
UHGV-0166559_26	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0166559_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0166559_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0166559_27	KOfam	K24174	METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]	NA
UHGV-0166559_27	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0166559_27	UniRef90	UniRef90_UPI001D0B82BF	MT-A70 family methyltransferase	NA
UHGV-0166559_27	eggNOG-mapper	1041159.AZUW01000001_gene3257	ParB-like nuclease domain	NA
UHGV-0166559_27	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0166559_27	Pfam	PF05063	MT-A70	MT-A70
UHGV-0166559_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0166559_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166559_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0166559_28	UniRef90	UniRef90_A0A6N7XL45	PBSX family phage terminase large subunit	NA
UHGV-0166559_28	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0166559_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0166559_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0166559_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0166559_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166559_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0166559_30	PHROG	phrog_1233	NA	unknown function
UHGV-0166559_30	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0166559_30	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0166559_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0166559_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0166559_32	UniRef90	UniRef90_A0A396P294	Terminase small subunit	NA
UHGV-0166559_32	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0166559_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0166559_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0166559_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0166559_36	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0166559_36	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0166559_39	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0166559_39	UniRef90	UniRef90_A0A417IIQ4	MazG domain-containing protein	NA
UHGV-0166559_39	eggNOG-mapper	1415774.U728_1686	NA	NA
UHGV-0166559_39	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0166559_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0166559_40	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0166559_40	eggNOG-mapper	702437.HMPREF9432_00895	sigma factor activity	NA
UHGV-0166559_40	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0166559_40	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0166559_41	PHROG	phrog_9804	NA	unknown function
UHGV-0166559_41	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0166559_41	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0166559_41	AcrCatalog	cluster_137185	NA	NA
UHGV-0166559_41	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0166559_41	Structural annotation	PF11417	NA	NA
UHGV-0166559_42	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0166559_42	UniRef90	UniRef90_R6E0A4	DNA replication protein	NA
UHGV-0166559_42	eggNOG-mapper	1140001.I571_01717	DnaD domain protein	NA
UHGV-0166559_42	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0166559_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0166559_43	eggNOG-mapper	1235792.C808_03907	NA	NA
UHGV-0166559_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0166559_44	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0166559_44	UniRef90	UniRef90_R6DSN2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0166559_44	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0166559_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0166559_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0166559_44	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0166559_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0166559_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0166559_46	UniRef90	UniRef90_UPI001C3B6F21	single-stranded DNA-binding protein	NA
UHGV-0166559_46	eggNOG-mapper	1321814.HMPREF9089_01469	Single-stranded DNA-binding protein	NA
UHGV-0166559_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0166559_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0166559_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0166559_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0166559_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0166559_47	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0166559_47	UniRef90	UniRef90_A0A3A8WNK1	Radical SAM protein	NA
UHGV-0166559_47	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0166559_47	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0166559_47	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0166559_48	PHROG	phrog_7566	NA	unknown function
UHGV-0166559_48	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0166559_49	PHROG	phrog_1389	NA	unknown function
UHGV-0166559_49	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0166559_49	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0166559_50	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166559_50	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0166559_50	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0166559_50	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0166559_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0166559_51	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0166559_51	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0166559_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0166559_51	Structural annotation	PF05565	NA	NA
UHGV-0166559_54	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0166559_54	PHROG	phrog_32437	NA	unknown function
UHGV-0166559_54	UniRef90	UniRef90_R6ETT3	Transglycosylase SLT domain protein	NA
UHGV-0166559_54	eggNOG-mapper	743974.MBO_02867	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	NA
UHGV-0166559_54	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0166559_54	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0166559_54	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0166559_56	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0166559_57	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0166559_57	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0166559_57	UniRef90	UniRef90_A0A413S067	XRE family transcriptional regulator	NA
UHGV-0166559_57	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0166559_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0166559_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166559_57	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0166559_60	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0166559_60	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0166559_60	UniRef90	UniRef90_A0A373LXV0	LexA family transcriptional regulator	NA
UHGV-0166559_60	eggNOG-mapper	1321784.HMPREF1987_01096	Peptidase S24-like	NA
UHGV-0166559_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0166559_60	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0166559_60	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0166559_60	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0166559_61	KOfam	K14059	int; integrase	NA
UHGV-0166559_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0166559_61	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0166559_61	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0166559_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0166559_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0166559_61	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0166559_61	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA