UHGV-0166682

Genome information

Genome length 38,897 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166682
vOTU ID	vOTU-063151
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_507239
BioSample	SAMN06164854
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.05
Jumbo phage	No

Genome content
Genome length	38,897 bps
GC content	56.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	88.59%
Average CDS length	596.95 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166682_2	eggNOG-mapper	748224.HMPREF9436_01616	NA	NA
UHGV-0166682_4	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0166682_4	PHROG	phrog_2737	NA	unknown function
UHGV-0166682_4	UniRef90	UniRef90_D4K1V8	Addiction module antitoxin, RelB/DinJ family	NA
UHGV-0166682_4	eggNOG-mapper	411483.FAEPRAA2165_00387	RelB antitoxin	NA
UHGV-0166682_4	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0166682_4	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0166682_4	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0166682_4	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0166682_5	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0166682_5	PHROG	phrog_2455	NA	unknown function
UHGV-0166682_5	UniRef90	UniRef90_D4K1V7	Plasmid stabilisation system protein	NA
UHGV-0166682_5	eggNOG-mapper	657322.FPR_16090	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0166682_5	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0166682_5	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0166682_5	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-0166682_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0166682_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0166682_6	UniRef90	UniRef90_D4KBP6	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0166682_6	eggNOG-mapper	411483.FAEPRAA2165_00385	NA	NA
UHGV-0166682_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0166682_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0166682_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0166682_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0166682_6	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0166682_7	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0166682_7	UniRef90	UniRef90_A0A2A7AIM0	Spo0A_C domain-containing protein	NA
UHGV-0166682_7	eggNOG-mapper	33035.JPJF01000025_gene2627	protein-glutamate methylesterase activity	NA
UHGV-0166682_7	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0166682_7	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0166682_7	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0166682_8	PHROG	phrog_263	holin	lysis
UHGV-0166682_8	UniRef90	UniRef90_A0A2A7AI87	Phage holin	NA
UHGV-0166682_8	eggNOG-mapper	718252.FP2_06470	SPP1 phage holin	NA
UHGV-0166682_8	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0166682_8	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0166682_8	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0166682_9	PHROG	phrog_4105	NA	unknown function
UHGV-0166682_9	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-0166682_11	KOfam	K07273	acm; lysozyme	NA
UHGV-0166682_11	PHROG	phrog_291	endolysin	lysis
UHGV-0166682_11	UniRef90	UniRef90_A0A173W4B0	Autolytic lysozyme	NA
UHGV-0166682_11	eggNOG-mapper	411483.FAEPRAA2165_00002	hydrolase, family 25	NA
UHGV-0166682_11	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0166682_11	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0166682_11	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0166682_12	PHROG	phrog_1382	NA	unknown function
UHGV-0166682_14	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0166682_14	PHROG	phrog_9534	head protein	head and packaging
UHGV-0166682_14	UniRef90	UniRef90_A0A3E2XBB2	Collagen-like protein	NA
UHGV-0166682_14	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0166682_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0166682_14	Structural annotation	PF21567	NA	NA
UHGV-0166682_15	PHROG	phrog_538	minor tail protein	tail
UHGV-0166682_15	UniRef90	UniRef90_UPI001899858F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0166682_15	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0166682_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0166682_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0166682_16	PHROG	phrog_36410	NA	unknown function
UHGV-0166682_16	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0166682_16	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0166682_16	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0166682_17	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0166682_17	UniRef90	UniRef90_A0A2A7BH30	Phage tail tape measure protein	NA
UHGV-0166682_17	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0166682_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0166682_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0166682_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0166682_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0166682_18	PHROG	phrog_706	NA	unknown function
UHGV-0166682_18	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0166682_18	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0166682_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0166682_18	Structural annotation	PF06854	NA	NA
UHGV-0166682_19	PHROG	phrog_4450	NA	unknown function
UHGV-0166682_19	Structural annotation	PF20378	NA	NA
UHGV-0166682_20	PHROG	phrog_820	major tail protein	tail
UHGV-0166682_20	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0166682_20	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0166682_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0166682_21	PHROG	phrog_3266	tail completion	connector
UHGV-0166682_21	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0166682_21	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0166682_21	Structural annotation	PF12691	NA	NA
UHGV-0166682_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0166682_22	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-0166682_22	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-0166682_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0166682_22	Structural annotation	PF11114	NA	NA
UHGV-0166682_23	PHROG	phrog_3366	NA	unknown function
UHGV-0166682_23	Structural annotation	PF20536	NA	NA
UHGV-0166682_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0166682_25	PHROG	phrog_267	major head protein	head and packaging
UHGV-0166682_25	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0166682_25	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0166682_25	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0166682_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0166682_26	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0166682_26	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0166682_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0166682_26	Structural annotation	PF06810	NA	NA
UHGV-0166682_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0166682_28	UniRef90	UniRef90_UPI0012DC7B6E	phage minor capsid protein	NA
UHGV-0166682_28	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0166682_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0166682_28	COG	COG2369	NA	NA
UHGV-0166682_28	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0166682_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0166682_29	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0166682_29	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0166682_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0166682_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166682_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0166682_30	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-0166682_30	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0166682_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0166682_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166682_30	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0166682_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0166682_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0166682_31	UniRef90	UniRef90_A0A2A7AI72	Terminase small subunit	NA
UHGV-0166682_31	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0166682_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0166682_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0166682_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0166682_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0166682_32	Pfam	PF07374	NA	DUF1492
UHGV-0166682_32	Structural annotation	PF04545, TIGR02984	NA	NA
UHGV-0166682_33	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0166682_33	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0166682_33	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0166682_33	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0166682_34	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0166682_34	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-0166682_34	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0166682_34	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0166682_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0166682_34	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0166682_35	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0166682_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0166682_35	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0166682_36	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0166682_36	UniRef90	UniRef90_A0A2A7BH07	Phage recombination protein Bet	NA
UHGV-0166682_36	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0166682_36	Pfam	PF03837	RecT family	RecT
UHGV-0166682_36	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0166682_36	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0166682_36	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0166682_37	PHROG	phrog_674	NA	unknown function
UHGV-0166682_37	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0166682_37	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0166682_37	Pfam	PF07083	NA	DUF1351
UHGV-0166682_37	Structural annotation	PF07083	NA	NA
UHGV-0166682_39	PHROG	phrog_1733	NA	unknown function
UHGV-0166682_39	UniRef90	UniRef90_UPI001967A828	cell envelope integrity protein TolA	NA
UHGV-0166682_39	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0166682_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0166682_40	Structural annotation	PF12957	NA	NA
UHGV-0166682_42	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0166682_43	PHROG	phrog_37789	NA	unknown function
UHGV-0166682_44	PHROG	phrog_32852	NA	unknown function
UHGV-0166682_45	UniRef90	UniRef90_A0A2A7BGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0166682_45	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0166682_46	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0166682_46	UniRef90	UniRef90_E2ZIF5	Phage regulatory protein, Rha family	NA
UHGV-0166682_46	eggNOG-mapper	748224.HMPREF9436_01449	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0166682_46	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0166682_46	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0166682_46	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0166682_46	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0166682_48	PHROG	phrog_2232	NA	unknown function
UHGV-0166682_48	UniRef90	UniRef90_A0A6A7K9D3	NA	NA
UHGV-0166682_48	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0166682_48	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0166682_48	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0166682_49	Structural annotation	PF15582, MF_00791, NF041178, COG2847	NA	NA
UHGV-0166682_53	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0166682_53	UniRef90	UniRef90_A0A3A6EAL3	NA	NA
UHGV-0166682_53	eggNOG-mapper	748224.HMPREF9436_01446	NA	NA
UHGV-0166682_54	PHROG	phrog_14088	NA	unknown function
UHGV-0166682_54	UniRef90	UniRef90_UPI001D07CB3C	carboxypeptidase	NA
UHGV-0166682_54	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0166682_55	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0166682_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0166682_55	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-0166682_55	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0166682_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0166682_55	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0166682_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0166682_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0166682_57	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-0166682_57	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-0166682_58	KOfam	K14059	int; integrase	NA
UHGV-0166682_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0166682_58	UniRef90	UniRef90_E2ZIE8	Site-specific recombinase, phage integrase family	NA
UHGV-0166682_58	eggNOG-mapper	748224.HMPREF9436_01442	Belongs to the 'phage' integrase family	NA
UHGV-0166682_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0166682_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0166682_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA