UHGV-0166689

Genome information

Genome length 24,211 bps

CDS count 29

Completeness 53.71% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166689
vOTU ID	vOTU-028303
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_547796
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.45
Jumbo phage	No

Genome content
Genome length	24,211 bps
GC content	42.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	88.52%
Average CDS length	741.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166689_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0166689_1	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0166689_1	UniRef90	UniRef90_A0A3C2BBF8	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-0166689_1	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0166689_1	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0166689_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0166689_1	Structural annotation	PF17288, TIGR01547, COG5362	NA	NA
UHGV-0166689_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0166689_3	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0166689_3	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0166689_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0166689_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0166689_4	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0166689_4	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0166689_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0166689_4	COG	COG2369	NA	NA
UHGV-0166689_4	Structural annotation	PF06152	NA	NA
UHGV-0166689_5	PHROG	phrog_3754	NA	unknown function
UHGV-0166689_5	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0166689_6	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0166689_6	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0166689_7	PHROG	phrog_21718	NA	unknown function
UHGV-0166689_7	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0166689_8	PHROG	phrog_22984	NA	unknown function
UHGV-0166689_9	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166689_9	UniRef90	UniRef90_R7HLP8	Prophage LambdaSa2 HNH endonuclease family protein	NA
UHGV-0166689_9	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0166689_9	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0166689_9	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0166689_9	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0166689_9	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0166689_9	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0166689_10	PHROG	phrog_16490	NA	unknown function
UHGV-0166689_10	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0166689_11	PHROG	phrog_20016	NA	unknown function
UHGV-0166689_11	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0166689_11	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0166689_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0166689_12	PHROG	phrog_28802	NA	unknown function
UHGV-0166689_12	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0166689_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0166689_13	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0166689_13	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0166689_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0166689_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-0166689_14	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0166689_14	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0166689_14	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0166689_14	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0166689_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0166689_15	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0166689_17	PHROG	phrog_1129	holin	lysis
UHGV-0166689_17	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0166689_17	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0166689_17	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0166689_17	Structural annotation	PF06946	NA	NA
UHGV-0166689_18	PHROG	phrog_3366	NA	unknown function
UHGV-0166689_18	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0166689_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0166689_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0166689_19	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0166689_19	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0166689_19	Structural annotation	PF11114	NA	NA
UHGV-0166689_20	PHROG	phrog_3266	tail completion	connector
UHGV-0166689_20	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0166689_20	Structural annotation	PF12691	NA	NA
UHGV-0166689_21	PHROG	phrog_3099	NA	unknown function
UHGV-0166689_21	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0166689_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0166689_22	PHROG	phrog_11299	NA	unknown function
UHGV-0166689_22	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0166689_22	Structural annotation	PF10666	NA	NA
UHGV-0166689_23	PHROG	phrog_706	NA	unknown function
UHGV-0166689_23	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0166689_23	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0166689_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0166689_23	Structural annotation	PF06854	NA	NA
UHGV-0166689_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0166689_24	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0166689_24	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0166689_24	COG	COG1511	NA	NA
UHGV-0166689_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0166689_25	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0166689_26	PHROG	phrog_6616	tail protein	tail
UHGV-0166689_26	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0166689_26	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0166689_26	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0166689_27	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0166689_28	UniRef90	UniRef90_UPI001D05E3B7	H-type lectin domain-containing protein	NA
UHGV-0166689_28	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0166689_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0166689_29	PHROG	phrog_291	endolysin	lysis
UHGV-0166689_29	UniRef90	UniRef90_A0A1C5RZF8	Autolytic lysozyme	NA
UHGV-0166689_29	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0166689_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0166689_29	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0166689_29	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA