UHGV-0166708

Genome information

vOTU vOTU-019656

Genome length 51,842 bps

CDS count 80

Completeness 73.51% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0166708
vOTU ID	vOTU-019656
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_554472
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.96
Jumbo phage	No

Genome content
Genome length	51,842 bps
GC content	38.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	88.96%
Average CDS length	579.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0166708_1	PHROG	phrog_11996	NA	unknown function
UHGV-0166708_1	eggNOG-mapper	411901.BACCAC_01137	NA	NA
UHGV-0166708_2	UniRef90	UniRef90_UPI001C37A1CD	lipoprotein	NA
UHGV-0166708_2	Structural annotation	PF20770, MF_04071, NF040673, COG3823	NA	NA
UHGV-0166708_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0166708_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0166708_3	UniRef90	UniRef90_A0A372UWG9	Type I restriction endonuclease subunit R	NA
UHGV-0166708_3	eggNOG-mapper	411901.BACCAC_01135	Type I restriction enzyme HsdR protein	NA
UHGV-0166708_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0166708_3	COG	COG4748	NA	NA
UHGV-0166708_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0166708_4	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0166708_4	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0166708_4	UniRef90	UniRef90_A0A372UYG6	TMP_3 domain-containing protein	NA
UHGV-0166708_4	eggNOG-mapper	411901.BACCAC_01134	NA	NA
UHGV-0166708_4	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0166708_4	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0166708_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0166708_4	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0166708_5	PHROG	phrog_6305	tail protein	tail
UHGV-0166708_5	eggNOG-mapper	411901.BACCAC_01133	NA	NA
UHGV-0166708_5	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0166708_6	PHROG	phrog_38044	NA	unknown function
UHGV-0166708_6	UniRef90	UniRef90_A0A642MCP7	Prophage_tail domain-containing protein (Fragment)	NA
UHGV-0166708_6	eggNOG-mapper	411901.BACCAC_01132	Phage minor structural protein	NA
UHGV-0166708_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0166708_6	COG	COG4926	Phage-related protein	NA
UHGV-0166708_6	Structural annotation	PF14594, PF05629, TIGR01646, TIGR03721, COG4379	NA	NA
UHGV-0166708_7	PHROG	phrog_22546	NA	unknown function
UHGV-0166708_7	UniRef90	UniRef90_A0A412I9C3	Collagen-like protein	NA
UHGV-0166708_7	eggNOG-mapper	411901.BACCAC_00720	chlorophyll binding	NA
UHGV-0166708_7	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0166708_8	eggNOG-mapper	411901.BACCAC_01129	NA	NA
UHGV-0166708_9	Structural annotation	PF17789, COG3470	NA	NA
UHGV-0166708_11	UniRef90	UniRef90_A5ZE15	BACON domain-containing protein	NA
UHGV-0166708_11	eggNOG-mapper	411901.BACCAC_01126	Putative binding domain, N-terminal	NA
UHGV-0166708_11	Pfam	PF13004	Putative binding domain, N-terminal	BACON
UHGV-0166708_11	Structural annotation	PF19190, NF011836, COG5492	NA	NA
UHGV-0166708_13	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0166708_13	Structural annotation	NF012201	NA	NA
UHGV-0166708_14	UniRef90	UniRef90_A0A372UWS1	NA	NA
UHGV-0166708_14	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-0166708_14	Pfam	PF14301	NA	DUF4376
UHGV-0166708_14	Structural annotation	PF14301	NA	NA
UHGV-0166708_15	UniRef90	UniRef90_A0A372UZ63	Glycosyl transferase	NA
UHGV-0166708_15	eggNOG-mapper	411901.BACCAC_01122	NA	NA
UHGV-0166708_16	UniRef90	UniRef90_UPI00189CD2F4	phage holin family protein	NA
UHGV-0166708_16	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0166708_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0166708_16	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0166708_18	Structural annotation	PF10043, NF008028, COG5652	NA	NA
UHGV-0166708_19	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0166708_19	PHROG	phrog_822	amidase	lysis
UHGV-0166708_19	UniRef90	UniRef90_UPI001C375BE4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0166708_19	eggNOG-mapper	657309.BXY_05110	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0166708_19	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0166708_19	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0166708_20	Structural annotation	PF17994, NF038128	NA	NA
UHGV-0166708_22	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-0166708_22	UniRef90	UniRef90_UPI001E50E70D	SGNH/GDSL hydrolase family protein	NA
UHGV-0166708_22	eggNOG-mapper	411901.BACCAC_01116	Calcineurin-like phosphoesterase	NA
UHGV-0166708_24	PHROG	phrog_26448	NA	unknown function
UHGV-0166708_24	eggNOG-mapper	411901.BACCAC_01114	NA	NA
UHGV-0166708_24	Pfam	PF20647	NA	DUF6808
UHGV-0166708_24	Structural annotation	PF20647	NA	NA
UHGV-0166708_25	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0166708_25	eggNOG-mapper	411901.BACCAC_01113	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0166708_25	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0166708_26	PHROG	phrog_16490	NA	unknown function
UHGV-0166708_26	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0166708_26	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0166708_27	PHROG	phrog_31654	NA	unknown function
UHGV-0166708_27	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0166708_28	PHROG	phrog_28898	NA	unknown function
UHGV-0166708_28	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0166708_28	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0166708_28	Structural annotation	PF10781	NA	NA
UHGV-0166708_30	PHROG	phrog_38431	NA	unknown function
UHGV-0166708_30	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0166708_30	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0166708_31	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0166708_31	eggNOG-mapper	411901.BACCAC_01107	NA	NA
UHGV-0166708_33	PHROG	phrog_5783	NA	unknown function
UHGV-0166708_33	UniRef90	UniRef90_UPI001E2C6287	NYN domain-containing protein	NA
UHGV-0166708_33	eggNOG-mapper	702438.HMPREF9431_02012	NYN domain	NA
UHGV-0166708_33	Pfam	PF01936	NYN domain	NYN
UHGV-0166708_33	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0166708_33	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0166708_34	eggNOG-mapper	657309.BXY_05630	NA	NA
UHGV-0166708_35	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0166708_35	UniRef90	UniRef90_A0A373G4H6	XRE family transcriptional regulator	NA
UHGV-0166708_35	eggNOG-mapper	1121100.JCM6294_1580	NA	NA
UHGV-0166708_35	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0166708_38	PHROG	phrog_30054	NA	unknown function
UHGV-0166708_38	eggNOG-mapper	1121101.HMPREF1532_02565	NA	NA
UHGV-0166708_40	eggNOG-mapper	357276.EL88_11545	NA	NA
UHGV-0166708_42	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0166708_42	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0166708_43	Pfam	PF11759	Keratin-associated matrix	KRTAP
UHGV-0166708_44	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0166708_44	UniRef90	UniRef90_A0A1Q6HQB9	DNA-binding protein	NA
UHGV-0166708_44	eggNOG-mapper	762968.HMPREF9441_02243	AAA domain	NA
UHGV-0166708_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0166708_44	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0166708_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0166708_45	PHROG	phrog_35319	NA	unknown function
UHGV-0166708_45	UniRef90	UniRef90_A0A380Z3N3	HNH endonuclease	NA
UHGV-0166708_45	eggNOG-mapper	357276.EL88_11525	NA	NA
UHGV-0166708_45	Structural annotation	PF10926, MF_03030	NA	NA
UHGV-0166708_46	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0166708_46	UniRef90	UniRef90_A0A413GSH5	NA	NA
UHGV-0166708_46	eggNOG-mapper	357276.EL88_11515	NA	NA
UHGV-0166708_46	Pfam	PF11325	NA	DUF3127
UHGV-0166708_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0166708_46	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0166708_47	eggNOG-mapper	1556290.A0A0A0RKR9_9CAUD	NA	NA
UHGV-0166708_47	Structural annotation	PF18275	NA	NA
UHGV-0166708_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0166708_48	eggNOG-mapper	357276.EL88_11510	NA	NA
UHGV-0166708_48	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0166708_50	PHROG	phrog_824	NA	unknown function
UHGV-0166708_50	UniRef90	UniRef90_R5UA08	VRR-NUC domain protein	NA
UHGV-0166708_50	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-0166708_50	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0166708_51	PHROG	phrog_24654	NA	unknown function
UHGV-0166708_53	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0166708_53	UniRef90	UniRef90_UPI0018978E9F	KilA-N domain-containing protein	NA
UHGV-0166708_53	eggNOG-mapper	1127696.HMPREF9134_00474	Phage antirepressor protein KilAC domain	NA
UHGV-0166708_53	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0166708_53	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0166708_54	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0166708_54	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-0166708_54	UniRef90	UniRef90_UPI00189C575A	phage antirepressor KilAC domain-containing protein	NA
UHGV-0166708_54	eggNOG-mapper	1268240.ATFI01000020_gene144	KilA-N domain	NA
UHGV-0166708_54	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0166708_54	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0166708_54	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0166708_54	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0166708_55	Structural annotation	PF18450	NA	NA
UHGV-0166708_56	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0166708_56	UniRef90	UniRef90_UPI001E398488	NA	NA
UHGV-0166708_56	eggNOG-mapper	357276.EL88_11475	NA	NA
UHGV-0166708_56	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0166708_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0166708_56	Structural annotation	PF14297	NA	NA
UHGV-0166708_57	PHROG	phrog_35728	NA	unknown function
UHGV-0166708_57	eggNOG-mapper	1121100.JCM6294_533	NA	NA
UHGV-0166708_57	Structural annotation	PF20338	NA	NA
UHGV-0166708_58	UniRef90	UniRef90_UPI001E296F76	host-nuclease inhibitor Gam family protein	NA
UHGV-0166708_58	eggNOG-mapper	411901.BACCAC_01185	NA	NA
UHGV-0166708_61	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0166708_61	UniRef90	UniRef90_A0A3L7Z1V5	Radical SAM protein	NA
UHGV-0166708_61	eggNOG-mapper	411476.BACOVA_03916	radical SAM domain protein	NA
UHGV-0166708_61	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0166708_61	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-0166708_63	UniRef90	UniRef90_UPI0013D52378	NA	NA
UHGV-0166708_63	Structural annotation	PF09723, COG2331	NA	NA
UHGV-0166708_66	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0166708_68	UniRef90	UniRef90_A0A642MC54	NA	NA
UHGV-0166708_68	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-0166708_68	Pfam	PF04448	NA	DUF551
UHGV-0166708_68	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0166708_69	eggNOG-mapper	1121098.HMPREF1534_01092	NA	NA
UHGV-0166708_70	Structural annotation	PF17574, TIGR04550	NA	NA
UHGV-0166708_71	PHROG	phrog_28609	NA	unknown function
UHGV-0166708_71	eggNOG-mapper	357276.EL88_11370	NA	NA
UHGV-0166708_73	PHROG	phrog_7314	NA	unknown function
UHGV-0166708_74	PHROG	phrog_8684	NA	unknown function
UHGV-0166708_74	UniRef90	UniRef90_UPI001C3FC3BB	YopX family protein	NA
UHGV-0166708_74	eggNOG-mapper	742727.HMPREF9447_04806	YopX protein	NA
UHGV-0166708_74	Pfam	PF09643	YopX protein	YopX
UHGV-0166708_74	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0166708_77	PHROG	phrog_874	NA	unknown function
UHGV-0166708_77	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0166708_77	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0166708_79	PHROG	phrog_2450	NA	unknown function
UHGV-0166708_79	UniRef90	UniRef90_A0A372UWN9	NA	NA
UHGV-0166708_79	eggNOG-mapper	411901.BACCAC_01161	NA	NA
UHGV-0166708_79	Pfam	PF04343	NA	DUF488
UHGV-0166708_79	Structural annotation	COG3189	NA	NA
UHGV-0166708_80	PHROG	phrog_7858	NA	unknown function
UHGV-0166708_80	eggNOG-mapper	411901.BACCAC_01159	NA	NA
UHGV-0166708_80	Structural annotation	PF11039, PF03602, MF_02125, MF_00084, NF007527, TIGR00571, COG3981, COG0338	NA	NA